Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.20615	Pex11a	peroxisomal biogenesis factor 11a	7		18631
Gene Ontology	integral to membrane | peroxisome organization and biogenesis
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 104 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTCGAGTTTC (4) 11.4 0.0114 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC GACATTTTAC (5) 3.3 0.0033 P8 Cb GC CCATCCAGGC (5) 1.6 0.0016 P8 Cb GC GTGTTTGTGT (3) 1.6 0.0016 Cb medulloblastoma CTCGAGTTTC (4) 13.9 0.0139 Cb medulloblastoma AATCCTTTAA (3) 2.3 0.0023 Cb medulloblastoma ACCCGCCTGC (3) 2.3 0.0023 Cb medulloblastoma TCTGACTGAG (2) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture CTCGAGTTTC (4) 17.1 0.0171 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GTAAGTGGCA 6.8 0.0068 P8 GC+1d culture GACATTTTAC (5) 2.3 0.0023 P8 GC+1d culture AAGAGTCCTT (2) 1.1 0.0011 P8 GC+1d culture GTGGCAGGCA (5) 1.1 0.0011 P8 GC+1d culture GTGTTTGTGT (3) 1.1 0.0011 P8 GC+SHH+1d culture CTCGAGTTTC (4) 7 0.007 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture AGGTGAGCGA (2) 2.3 0.0023 P8 GC+SHH+1d culture GACATTTTAC (5) 2.3 0.0023 P8 GC+SHH+1d culture AATCCTTTAA (3) 1.2 0.0012 P8 GC+SHH+1d culture GTAAGTGGCA 1.2 0.0012 P8 GC+SHH+1d culture GTGGCAGGCA (5) 1.2 0.0012 3T3 fibroblasts CTCGAGTTTC (4) 28 0.028 3T3 fibroblasts ACCCGCCTGC (3) 21 0.021 E15 cortex CTCGAGTTTC (4) 14.8 0.0148 E15 cortex CCATCCAGGC (5) 4.9 0.0049 E15 cortex GAAATGGAAA (8) 4.9 0.0049 E15 cortex GTGTTTGTGT (3) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex AATCCTTTAA (3) 9.1 0.0091 P1 cortex CCATCCAGGC (5) 9.1 0.0091 P1 cortex AAGAGTCCTT (2) 4.5 0.0045 P1 cortex ACCCGCCTGC (3) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus CTCGAGTTTC (4) 3.6 0.0036 Hypothalamus CCATCCAGGC (5) 1.8 0.0018 E12.5 retina CTCGAGTTTC (4) 7.5 0.0075 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GACATTTTAC (5) 3.8 0.0038 E12.5 retina AATCCTTTAA (3) 1.9 0.0019 E12.5 retina GTAAGTGGCA 1.9 0.0019 E12.5 retina GTGTTTGTGT (3) 1.9 0.0019 E12.5 retina TCTGACTGAG (2) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina CTCGAGTTTC (4) 3.6 0.0036 E14.5 retina AATCCTTTAA (3) 1.8 0.0018 E14.5 retina GACATTTTAC (5) 1.8 0.0018 E16.5 retina GTGTTTGTGT (3) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina AATGAAATTG (4) 1.8 0.0018 E16.5 retina GACATTTTAC (5) 1.8 0.0018 E16.5 retina GTGGCAGGCA (5) 1.8 0.0018 E16.5 retina TCTGACTGAG (2) 1.8 0.0018 E18.5 retina CTCGAGTTTC (4) 10.9 0.0109 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina ACCCGCCTGC (3) 1.8 0.0018 E18.5 retina GTAAGTGGCA 1.8 0.0018 P0.5 retina CTCGAGTTTC (4) 15.7 0.0157 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina GTGTTTGTGT (3) 5.9 0.0059 P0.5 retina ACCCGCCTGC (3) 3.9 0.0039 P0.5 retina AATGAAATTG (4) 2 0.002 P0.5 retina TCTGACTGAG (2) 2 0.002 P2.5 retina CTCGAGTTTC (4) 12.3 0.0123 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina GTGTTTGTGT (3) 5.3 0.0053 P2.5 retina GACATTTTAC (5) 1.8 0.0018 P2.5 retina TCTGACTGAG (2) 1.8 0.0018 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CTCGAGTTTC (4) 5.9 0.0059 P4.5 retina ACCCGCCTGC (3) 4 0.004 P4.5 retina GTAAGTGGCA 4 0.004 P4.5 retina AATCCTTTAA (3) 2 0.002 P4.5 retina CCATCCAGGC (5) 2 0.002 P4.5 retina GTGTTTGTGT (3) 2 0.002 P6.5 retina CTCGAGTTTC (4) 13.3 0.0133 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina AATCCTTTAA (3) 3.3 0.0033 P6.5 retina GAAATGGAAA (8) 1.7 0.0017 P6.5 retina GTAAGTGGCA 1.7 0.0017 P10.5 crx- retina CTCGAGTTTC (4) 11.1 0.0111 P10.5 crx- retina AATGAAATTG (4) 1.9 0.0019 P10.5 crx- retina ACCCGCCTGC (3) 1.9 0.0019 P10.5 crx- retina AGGTGAGCGA (2) 1.9 0.0019 P10.5 crx- retina GAAATGGAAA (8) 1.9 0.0019 P10.5 crx+ retina CTCGAGTTTC (4) 9.6 0.0096 P10.5 crx+ retina AATCCTTTAA (3) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina AAGAGTCCTT (2) 1.9 0.0019 P10.5 crx+ retina ACCCGCCTGC (3) 1.9 0.0019 P10.5 crx+ retina AGGTGAGCGA (2) 1.9 0.0019 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal ACCCGCCTGC (3) 5.6 0.0056 Adult retinal CTCGAGTTTC (4) 3.7 0.0037 Adult retinal GACATTTTAC (5) 3.7 0.0037 Adult retinal GTGTTTGTGT (3) 3.7 0.0037 ONL CTCGAGTTTC (4) 11.5 0.0115 ONL GTGTTTGTGT (3) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL AATCCTTTAA (3) 1.9 0.0019 ONL CCATCCAGGC (5) 1.9 0.0019