Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.210766	Nphp1	nephronophthisis 1 (juvenile) homolog (human)	2		53885
Human Homolog	NPHP1[nephronophthisis 1 (juvenile)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 54 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGCACACA (30) 6.5 0.0065 P8 Cb GC CTCCGATTCC 3.3 0.0033 P8 Cb GC CAAAAGAAGG (7) 1.6 0.0016 Cb medulloblastoma GTGGCACACA (30) 11.6 0.0116 Cb medulloblastoma CAAAAGAAGG (7) 2.3 0.0023 P8 GC+1d culture GTGGCACACA (30) 13.7 0.0137 P8 GC+1d culture ACAGAAGAAA (9) 3.4 0.0034 P8 GC+1d culture CTCCGATTCC 3.4 0.0034 P8 GC+SHH+1d culture CAAAAGAAGG (7) 4.7 0.0047 P8 GC+SHH+1d culture CTCCGATTCC 2.3 0.0023 P8 GC+SHH+1d culture GTGGCACACA (30) 2.3 0.0023 P8 GC+SHH+1d culture ACAGAAGAAA (9) 1.2 0.0012 3T3 fibroblasts GTGGCACACA (30) 14 0.014 E15 cortex GTGGCACACA (30) 24.7 0.0247 E15 cortex ACAGAAGAAA (9) 4.9 0.0049 E15 cortex CTCCGATTCC 4.9 0.0049 P1 cortex CTCCGATTCC 9.1 0.0091 P1 cortex ACAGAAGAAA (9) 4.5 0.0045 P1 cortex GTGGCACACA (30) 4.5 0.0045 Hypothalamus GTGGCACACA (30) 7.2 0.0072 Hypothalamus CAAAAGAAGG (7) 1.8 0.0018 E12.5 retina GTGGCACACA (30) 11.3 0.0113 E14.5 retina GTGGCACACA (30) 18.2 0.0182 E14.5 retina TTCCACTATG (4) 14.6 0.0146 E14.5 retina CAAAAGAAGG (7) 1.8 0.0018 E16.5 retina GTGGCACACA (30) 9.1 0.0091 E16.5 retina ACAGAAGAAA (9) 1.8 0.0018 E18.5 retina GTGGCACACA (30) 5.5 0.0055 E18.5 retina CAAAAGAAGG (7) 1.8 0.0018 E18.5 retina CTCAGTCTGC 1.8 0.0018 E18.5 retina TTCCACTATG (4) 1.8 0.0018 P0.5 retina GTGGCACACA (30) 11.8 0.0118 P0.5 retina CTCCGATTCC 2 0.002 P2.5 retina GTGGCACACA (30) 17.6 0.0176 P2.5 retina CTCCGATTCC 3.5 0.0035 P2.5 retina ACAGAAGAAA (9) 1.8 0.0018 P2.5 retina CTCAGTCTGC 1.8 0.0018 P4.5 retina GTGGCACACA (30) 11.9 0.0119 P4.5 retina CAAAAGAAGG (7) 2 0.002 P4.5 retina CTCCGATTCC 2 0.002 P6.5 retina GTGGCACACA (30) 26.7 0.0267 P6.5 retina ACAGAAGAAA (9) 1.7 0.0017 P6.5 retina CAAAAGAAGG (7) 1.7 0.0017 P10.5 crx- retina GTGGCACACA (30) 13 0.013 P10.5 crx- retina CAAAAGAAGG (7) 1.9 0.0019 P10.5 crx+ retina GTGGCACACA (30) 7.7 0.0077 P10.5 crx+ retina CTCCGATTCC 3.8 0.0038 P10.5 crx+ retina CTCAGTCTGC 1.9 0.0019 Adult retinal GTGGCACACA (30) 5.6 0.0056 Adult retinal CAAAAGAAGG (7) 1.9 0.0019 ONL GTGGCACACA (30) 24.9 0.0249 ONL CAAAAGAAGG (7) 1.9 0.0019 ONL CTCAGTCTGC 1.9 0.0019 ONL TTCCACTATG (4) 1.9 0.0019