Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2115	Hnrpu	heterogeneous nuclear ribonucleoprotein U	1		51810
Gene Ontology	ribonucleoprotein complex | viral nucleocapsid
Human Homolog	HNRPU[heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 295 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGTCAGCAT 21.2 0.0212 P8 Cb GC TCAGTTCTTG 8.2 0.0082 P8 Cb GC ATACACTCCA 6.5 0.0065 P8 Cb GC AATCTGGCTG 3.3 0.0033 P8 Cb GC CAGCTGAAAA (4) 3.3 0.0033 P8 Cb GC GAGCCTGGGA (3) 3.3 0.0033 P8 Cb GC AATAAAAATT (3) 1.6 0.0016 P8 Cb GC CAGTGTGAGA (2) 1.6 0.0016 P8 Cb GC CTGTCCTCAA 1.6 0.0016 P8 Cb GC GAAGGACTAA (2) 1.6 0.0016 P8 Cb GC GCAGTCAGCA (3) 1.6 0.0016 P8 Cb GC GCCGAGGGTA 1.6 0.0016 P8 Cb GC GCTGTCCTCA (4) 1.6 0.0016 P8 Cb GC TGATGTTGGA (3) 1.6 0.0016 P8 Cb GC TTAGGTTCGG (3) 1.6 0.0016 P8 Cb GC TTCATAAAAG (2) 1.6 0.0016 P8 Cb GC TTCATAAATA (4) 1.6 0.0016 P8 Cb GC TTCTCTGCCA (6) 1.6 0.0016 P8 Cb GC TTGGAAATCT (9) 1.6 0.0016 Cb medulloblastoma TATTAAAAAA (6) 9.2 0.0092 Cb medulloblastoma TCAGTTCTTG 9.2 0.0092 Cb medulloblastoma AATAAAAATT (3) 6.9 0.0069 Cb medulloblastoma GCTGTCCTCA (4) 6.9 0.0069 Cb medulloblastoma GAAGGACTAA (2) 4.6 0.0046 Cb medulloblastoma AATCTGGCTG 2.3 0.0023 Cb medulloblastoma AGAAAAACAA (7) 2.3 0.0023 Cb medulloblastoma ATACACTCCA 2.3 0.0023 Cb medulloblastoma CAAGCCAGTC 2.3 0.0023 Cb medulloblastoma CAGCTGAAAA (4) 2.3 0.0023 Cb medulloblastoma CAGTGTGAGA (2) 2.3 0.0023 Cb medulloblastoma CGGGAGGAGA (3) 2.3 0.0023 Cb medulloblastoma GACCACGATG 2.3 0.0023 Cb medulloblastoma GAGCCTGGGA (3) 2.3 0.0023 Cb medulloblastoma GAGTCAGCAT 2.3 0.0023 Cb medulloblastoma GCCGAGGGTA 2.3 0.0023 Cb medulloblastoma TTATAAAAAA (6) 2.3 0.0023 Cb medulloblastoma TTCATAAATA (4) 2.3 0.0023 P8 GC+1d culture GAGTCAGCAT 20.5 0.0205 P8 GC+1d culture TCAGTTCTTG 9.1 0.0091 P8 GC+1d culture TGATGTTGGA (3) 6.8 0.0068 P8 GC+1d culture ATACACTCCA 5.7 0.0057 P8 GC+1d culture GAAGGACTAA (2) 4.6 0.0046 P8 GC+1d culture AATCTGGCTG 3.4 0.0034 P8 GC+1d culture TTAGGTTCGG (3) 3.4 0.0034 P8 GC+1d culture CCACAGAGAG 2.3 0.0023 P8 GC+1d culture TTCATAAATA (4) 2.3 0.0023 P8 GC+1d culture AGAAAAACAA (7) 1.1 0.0011 P8 GC+1d culture CAGCTGAAAA (4) 1.1 0.0011 P8 GC+1d culture CGGGAGGAGA (3) 1.1 0.0011 P8 GC+1d culture GCCAATAAAA (4) 1.1 0.0011 P8 GC+1d culture TATTAAAAAA (6) 1.1 0.0011 P8 GC+1d culture TTCATAAAAG (2) 1.1 0.0011 P8 GC+1d culture TTTATGAAAT 1.1 0.0011 P8 GC+SHH+1d culture GAGTCAGCAT 23.4 0.0234 P8 GC+SHH+1d culture GAAGGACTAA (2) 9.4 0.0094 P8 GC+SHH+1d culture TGATGTTGGA (3) 8.2 0.0082 P8 GC+SHH+1d culture TTAGGTTCGG (3) 8.2 0.0082 P8 GC+SHH+1d culture TCAGTTCTTG 4.7 0.0047 P8 GC+SHH+1d culture AATCTGGCTG 3.5 0.0035 P8 GC+SHH+1d culture ATACACTCCA 3.5 0.0035 P8 GC+SHH+1d culture TTCATAAATA (4) 3.5 0.0035 P8 GC+SHH+1d culture CGGGAGGAGA (3) 2.3 0.0023 P8 GC+SHH+1d culture GCCAATAAAA (4) 2.3 0.0023 P8 GC+SHH+1d culture TATTAAAAAA (6) 2.3 0.0023 P8 GC+SHH+1d culture ATCCACTCCA (4) 1.2 0.0012 P8 GC+SHH+1d culture CAGCTGAAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture GAGCCTGGGA (3) 1.2 0.0012 P8 GC+SHH+1d culture GCAGTCAGCA (3) 1.2 0.0012 P8 GC+SHH+1d culture GGAATCTGGA (5) 1.2 0.0012 P8 GC+SHH+1d culture TTATAAAAAA (6) 1.2 0.0012 P8 GC+SHH+1d culture TTCATAAAAG (2) 1.2 0.0012 P8 GC+SHH+1d culture TTCTCTGCCA (6) 1.2 0.0012 3T3 fibroblasts GAGTCAGCAT 31.5 0.0315 3T3 fibroblasts AGAGAGACAA (3) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AATCTGGCTG 7 0.007 3T3 fibroblasts ACAACACAGG (6) 3.5 0.0035 3T3 fibroblasts GCCGAGGGTA 3.5 0.0035 3T3 fibroblasts GCTGTCCTCA (4) 3.5 0.0035 3T3 fibroblasts TGATGTTGGA (3) 3.5 0.0035 E15 cortex GAAGGACTAA (2) 9.9 0.0099 E15 cortex CAAGCCAGTC 4.9 0.0049 E15 cortex GAGTCAGCAT 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TCAGTTCTTG 4.9 0.0049 E15 cortex TTAGGTTCGG (3) 4.9 0.0049 P1 cortex ATACACTCCA 4.5 0.0045 P1 cortex CAAGCCAGTC 4.5 0.0045 P1 cortex TCAGTTCTTG 4.5 0.0045 P1 cortex TGATGTTGGA (3) 4.5 0.0045 P1 cortex TTAGGTTCGG (3) 4.5 0.0045 P1 cortex TTCATAAATA (4) 4.5 0.0045 Hypothalamus AATCTGGCTG 5.4 0.0054 Hypothalamus GAGTCAGCAT 5.4 0.0054 Hypothalamus CGGGAGGAGA (3) 3.6 0.0036 Hypothalamus GCTGTCCTCA (4) 3.6 0.0036 Hypothalamus TCAGTTCTTG 3.6 0.0036 Hypothalamus TTCATAAAAG (2) 3.6 0.0036 Hypothalamus ACAACACAGG (6) 1.8 0.0018 Hypothalamus AGAAAAACAA (7) 1.8 0.0018 Hypothalamus ATTAAAATTA (4) 1.8 0.0018 Hypothalamus CAGTGTGAGA (2) 1.8 0.0018 Hypothalamus CTGTCCTCAA 1.8 0.0018 Hypothalamus GAAGGACTAA (2) 1.8 0.0018 Hypothalamus GCAGTCAGCA (3) 1.8 0.0018 Hypothalamus GCCAATAAAA (4) 1.8 0.0018 Hypothalamus GCTGCTTTCT (5) 1.8 0.0018 Hypothalamus GTCAAACAGA (4) 1.8 0.0018 Hypothalamus TGATGTTGGA (3) 1.8 0.0018 Hypothalamus TTAGGTTCGG (3) 1.8 0.0018 Hypothalamus TTCATAAATA (4) 1.8 0.0018 Hypothalamus TTGGAAATCT (9) 1.8 0.0018 Hypothalamus TTTATGAAAT 1.8 0.0018 E12.5 retina GAGTCAGCAT 18.8 0.0188 E12.5 retina GAAGGACTAA (2) 11.3 0.0113 E12.5 retina AATCTGGCTG 7.5 0.0075 E12.5 retina TCAGTTCTTG 7.5 0.0075 E12.5 retina CGGGAGGAGA (3) 5.6 0.0056 E12.5 retina TGATGTTGGA (3) 5.6 0.0056 E12.5 retina AGGGGAGGGG (3) 3.8 0.0038 E12.5 retina TTAGGTTCGG (3) 3.8 0.0038 E12.5 retina CCACAGAGAG 1.9 0.0019 E12.5 retina CTGTCCTCAA 1.9 0.0019 E12.5 retina GAGAAGAGGA (5) 1.9 0.0019 E12.5 retina GGAATCTGGA (5) 1.9 0.0019 E12.5 retina TATTAAAAAA (6) 1.9 0.0019 E12.5 retina TTGGAAATCT (9) 1.9 0.0019 E12.5 retina TTTATGAAAT 1.9 0.0019 E14.5 retina TTAGGTTCGG (3) 14.6 0.0146 E14.5 retina TGATGTTGGA (3) 10.9 0.0109 E14.5 retina GAGTCAGCAT 9.1 0.0091 E14.5 retina TCAGTTCTTG 9.1 0.0091 E14.5 retina GCTTCTGACC (2) 3.6 0.0036 E14.5 retina AGGGGAGGGG (3) 1.8 0.0018 E14.5 retina ATACACTCCA 1.8 0.0018 E14.5 retina GAAGGACTAA (2) 1.8 0.0018 E14.5 retina GCCAATAAAA (4) 1.8 0.0018 E14.5 retina TATTAAAAAA (6) 1.8 0.0018 E14.5 retina TTCATAAAAG (2) 1.8 0.0018 E14.5 retina TTCATAAATA (4) 1.8 0.0018 E16.5 retina GAGTCAGCAT 18.1 0.0181 E16.5 retina TTAGGTTCGG (3) 14.5 0.0145 E16.5 retina GAAGGACTAA (2) 7.2 0.0072 E16.5 retina TCAGTTCTTG 3.6 0.0036 E16.5 retina ATACACTCCA 1.8 0.0018 E16.5 retina ATCCACTCCA (4) 1.8 0.0018 E16.5 retina CTGTCCTCAA 1.8 0.0018 E16.5 retina GCTTCTGACC (2) 1.8 0.0018 E16.5 retina TAAAACAATA (5) 1.8 0.0018 E16.5 retina TGATGTTGGA (3) 1.8 0.0018 E16.5 retina TTCATAAAAG (2) 1.8 0.0018 E16.5 retina TTCATAAATA (4) 1.8 0.0018 E16.5 retina TTGGAAATCT (9) 1.8 0.0018 E18.5 retina GAGTCAGCAT 7.3 0.0073 E18.5 retina TCAGTTCTTG 7.3 0.0073 E18.5 retina GCCAATAAAA (4) 5.5 0.0055 E18.5 retina TTAGGTTCGG (3) 5.5 0.0055 E18.5 retina TATTAAAAAA (6) 3.6 0.0036 E18.5 retina ATACACTCCA 1.8 0.0018 E18.5 retina CAGTGTGAGA (2) 1.8 0.0018 E18.5 retina CGGGAGGAGA (3) 1.8 0.0018 E18.5 retina GCTTCTGACC (2) 1.8 0.0018 E18.5 retina TGATGTTGGA (3) 1.8 0.0018 E18.5 retina TTCATAAAAG (2) 1.8 0.0018 E18.5 retina TTCATAAATA (4) 1.8 0.0018 E18.5 retina TTGGAAATCT (9) 1.8 0.0018 P0.5 retina GAGTCAGCAT 19.6 0.0196 P0.5 retina TGATGTTGGA (3) 7.9 0.0079 P0.5 retina TTAGGTTCGG (3) 5.9 0.0059 P0.5 retina ACAACACAGG (6) 3.9 0.0039 P0.5 retina CGGGAGGAGA (3) 3.9 0.0039 P0.5 retina GAAGGACTAA (2) 3.9 0.0039 P0.5 retina GCCAATAAAA (4) 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TCAGTTCTTG 3.9 0.0039 P0.5 retina AATCTGGCTG 2 0.002 P0.5 retina ATACACTCCA 2 0.002 P0.5 retina GAGCCCGGGA (2) 2 0.002 P0.5 retina GCTGTCCTCA (4) 2 0.002 P0.5 retina TATTAAAAAA (6) 2 0.002 P0.5 retina TTCATAAATA (4) 2 0.002 P2.5 retina TTAGGTTCGG (3) 21.1 0.0211 P2.5 retina TCAGTTCTTG 12.3 0.0123 P2.5 retina GAGTCAGCAT 8.8 0.0088 P2.5 retina TGATGTTGGA (3) 3.5 0.0035 P2.5 retina AATCTGGCTG 1.8 0.0018 P2.5 retina ACAACACAGG (6) 1.8 0.0018 P2.5 retina AGGGGAGGGG (3) 1.8 0.0018 P2.5 retina CAAGCCAGTC 1.8 0.0018 P2.5 retina CGGGAGGAGA (3) 1.8 0.0018 P2.5 retina GAAGGACTAA (2) 1.8 0.0018 P2.5 retina GCCGAGGGTA 1.8 0.0018 P2.5 retina GGGGGGGCTT (3) 1.8 0.0018 P2.5 retina GTCAAACAGA (4) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TTATAAAAAA (6) 1.8 0.0018 P2.5 retina TTCATAAAAG (2) 1.8 0.0018 P2.5 retina TTCTCTGCCA (6) 1.8 0.0018 P4.5 retina GAGTCAGCAT 11.9 0.0119 P4.5 retina TTAGGTTCGG (3) 9.9 0.0099 P4.5 retina TTCATAAATA (4) 9.9 0.0099 P4.5 retina GCCAATAAAA (4) 4 0.004 P4.5 retina TGATGTTGGA (3) 4 0.004 P4.5 retina AATAAAAATT (3) 2 0.002 P4.5 retina AATCTGGCTG 2 0.002 P4.5 retina ATACACTCCA 2 0.002 P4.5 retina ATCCACTCCA (4) 2 0.002 P4.5 retina CCACAGAGAG 2 0.002 P4.5 retina GAGAAGAGGA (5) 2 0.002 P4.5 retina GAGCCCGGGA (2) 2 0.002 P4.5 retina GAGCCTGGGA (3) 2 0.002 P4.5 retina GGGGGGGCTT (3) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TATTAAAAAA (6) 2 0.002 P4.5 retina TCAGTTCTTG 2 0.002 P4.5 retina TTATAAAAAA (6) 2 0.002 P4.5 retina TTCTCTGCCA (6) 2 0.002 P6.5 retina GAGTCAGCAT 11.7 0.0117 P6.5 retina TGATGTTGGA (3) 10 0.01 P6.5 retina GCCAATAAAA (4) 8.3 0.0083 P6.5 retina TCAGTTCTTG 5 0.005 P6.5 retina TTCATAAATA (4) 5 0.005 P6.5 retina GAAGGACTAA (2) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TTAGGTTCGG (3) 3.3 0.0033 P6.5 retina AATCTGGCTG 1.7 0.0017 P6.5 retina ATTAAAATTA (4) 1.7 0.0017 P6.5 retina CAAGCCAGTC 1.7 0.0017 P6.5 retina CAGCTGAAAA (4) 1.7 0.0017 P6.5 retina CCACAGAGAG 1.7 0.0017 P6.5 retina CTGTCCTCAA 1.7 0.0017 P6.5 retina GGAATCTGGA (5) 1.7 0.0017 P6.5 retina GGGGGGGCTT (3) 1.7 0.0017 P6.5 retina TTCTCTGCCA (6) 1.7 0.0017 P6.5 retina TTGGAAATCT (9) 1.7 0.0017 P10.5 crx- retina TTAGGTTCGG (3) 24.2 0.0242 P10.5 crx- retina GAGTCAGCAT 13 0.013 P10.5 crx- retina TCAGTTCTTG 11.1 0.0111 P10.5 crx- retina TGATGTTGGA (3) 11.1 0.0111 P10.5 crx- retina AATAAAAATT (3) 1.9 0.0019 P10.5 crx- retina AATCTGGCTG 1.9 0.0019 P10.5 crx- retina ATACACTCCA 1.9 0.0019 P10.5 crx- retina TTCATAAAAG (2) 1.9 0.0019 P10.5 crx- retina TTCATAAATA (4) 1.9 0.0019 P10.5 crx- retina TTGGAAATCT (9) 1.9 0.0019 P10.5 crx+ retina TTAGGTTCGG (3) 13.5 0.0135 P10.5 crx+ retina GAGTCAGCAT 11.5 0.0115 P10.5 crx+ retina TCAGTTCTTG 11.5 0.0115 P10.5 crx+ retina GCCAATAAAA (4) 5.8 0.0058 P10.5 crx+ retina AATCTGGCTG 3.8 0.0038 P10.5 crx+ retina ATACACTCCA 3.8 0.0038 P10.5 crx+ retina GCAGTCAGCA (3) 3.8 0.0038 P10.5 crx+ retina TTCATAAATA (4) 3.8 0.0038 P10.5 crx+ retina AGGGGAGGGG (3) 1.9 0.0019 P10.5 crx+ retina CAGCTGAAAA (4) 1.9 0.0019 P10.5 crx+ retina CCACAGAGAG 1.9 0.0019 P10.5 crx+ retina GAAGGACTAA (2) 1.9 0.0019 P10.5 crx+ retina GACCACGATG 1.9 0.0019 P10.5 crx+ retina GAGAAGAGGA (5) 1.9 0.0019 P10.5 crx+ retina GAGCCTGGGA (3) 1.9 0.0019 P10.5 crx+ retina GCTGTCCTCA (4) 1.9 0.0019 P10.5 crx+ retina GCTTCTGACC (2) 1.9 0.0019 P10.5 crx+ retina GTCAAACAGA (4) 1.9 0.0019 P10.5 crx+ retina TTCATAAAAG (2) 1.9 0.0019 Adult retinal TTAGGTTCGG (3) 11.1 0.0111 Adult retinal CGGGAGGAGA (3) 9.3 0.0093 Adult retinal TCAGTTCTTG 7.4 0.0074 Adult retinal AATCTGGCTG 5.6 0.0056 Adult retinal GCCAATAAAA (4) 5.6 0.0056 Adult retinal GAAGGACTAA (2) 3.7 0.0037 Adult retinal GCTGTCCTCA (4) 3.7 0.0037 Adult retinal TGATGTTGGA (3) 3.7 0.0037 Adult retinal TTCATAAAAG (2) 3.7 0.0037 Adult retinal CAAGCCAGTC 1.9 0.0019 Adult retinal CTGTCCTCAA 1.9 0.0019 Adult retinal GACCACGATG 1.9 0.0019 Adult retinal GAGAAGAGGA (5) 1.9 0.0019 Adult retinal GAGCCCGGGA (2) 1.9 0.0019 Adult retinal GAGTCAGCAT 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TAAAACAATA (5) 1.9 0.0019 Adult retinal TTCATAAATA (4) 1.9 0.0019 ONL GAGTCAGCAT 13.4 0.0134 ONL TCAGTTCTTG 9.6 0.0096 ONL ATACACTCCA 7.7 0.0077 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TGATGTTGGA (3) 5.7 0.0057 ONL TATTAAAAAA (6) 3.8 0.0038 ONL TTAGGTTCGG (3) 3.8 0.0038 ONL AATCTGGCTG 1.9 0.0019 ONL ATTAAAATTA (4) 1.9 0.0019 ONL CTGTCCTCAA 1.9 0.0019 ONL GCAGTCAGCA (3) 1.9 0.0019 ONL GCCAATAAAA (4) 1.9 0.0019 ONL TAAAACAATA (5) 1.9 0.0019