Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2115	Hnrpu	heterogeneous nuclear ribonucleoprotein U	1		51810
Gene Ontology	ribonucleoprotein complex | viral nucleocapsid
Human Homolog	HNRPU[heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 295 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATAAAAATT AATCTGGCTG ATACACTCCA CAGCTGAAAA (3) CAGTGTGAGA CTGTCCTCAA GAAGGACTAA (2) GAGCCTGGGA GAGTCAGCAT GCAGTCAGCA GCCGAGGGTA GCTGTCCTCA TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAAAG TTCATAAATA (3) TTCTCTGCCA (3) TTGGAAATCT (4) 66.6 0.0666 Cb medulloblastoma AATAAAAATT AATCTGGCTG AGAAAAACAA (2) ATACACTCCA CAAGCCAGTC CAGCTGAAAA (3) CAGTGTGAGA CGGGAGGAGA (2) GAAGGACTAA (2) GACCACGATG GAGCCTGGGA GAGTCAGCAT GCCGAGGGTA GCTGTCCTCA TATTAAAAAA (2) TCAGTTCTTG TTATAAAAAA TTCATAAATA (3) 66.7 0.0667 P8 GC+1d culture AATCTGGCTG AGAAAAACAA (2) ATACACTCCA CAGCTGAAAA (3) CCACAGAGAG CGGGAGGAGA (2) GAAGGACTAA (2) GAGTCAGCAT GCCAATAAAA (2) TATTAAAAAA (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAAAG TTCATAAATA (3) TTTATGAAAT 65.8 0.0658 P8 GC+SHH+1d culture AATCTGGCTG ATACACTCCA ATCCACTCCA CAGCTGAAAA (3) CGGGAGGAGA (2) GAAGGACTAA (2) GAGCCTGGGA GAGTCAGCAT GCAGTCAGCA GCCAATAAAA (2) GGAATCTGGA TATTAAAAAA (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTATAAAAAA TTCATAAAAG TTCATAAATA (3) TTCTCTGCCA (3) 80.9 0.0809 3T3 fibroblasts AATCTGGCTG ACAACACAGG (4) AGAGAGACAA (2) GAGTCAGCAT GCCGAGGGTA GCTGTCCTCA GTCATAGCTG (2) TGATGTTGGA (3) 73.5 0.0735 E15 cortex CAAGCCAGTC GAAGGACTAA (2) GAGTCAGCAT GTCATAGCTG (2) TCAGTTCTTG TTAGGTTCGG (3) 34.4 0.0344 P1 cortex ATACACTCCA CAAGCCAGTC TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAATA (3) 27 0.027 Hypothalamus AATCTGGCTG ACAACACAGG (4) AGAAAAACAA (2) ATTAAAATTA (3) CAGTGTGAGA CGGGAGGAGA (2) CTGTCCTCAA GAAGGACTAA (2) GAGTCAGCAT GCAGTCAGCA GCCAATAAAA (2) GCTGCTTTCT (3) GCTGTCCTCA GTCAAACAGA TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAAAG TTCATAAATA (3) TTGGAAATCT (4) TTTATGAAAT 52.2 0.0522 E12.5 retina AATCTGGCTG AGGGGAGGGG (2) CCACAGAGAG CGGGAGGAGA (2) CTGTCCTCAA GAAGGACTAA (2) GAGAAGAGGA GAGTCAGCAT GGAATCTGGA TATTAAAAAA (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTGGAAATCT (4) TTTATGAAAT 77.2 0.0772 E14.5 retina AGGGGAGGGG (2) ATACACTCCA GAAGGACTAA (2) GAGTCAGCAT GCCAATAAAA (2) GCTTCTGACC TATTAAAAAA (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAAAG TTCATAAATA (3) 59.9 0.0599 E16.5 retina ATACACTCCA ATCCACTCCA CTGTCCTCAA GAAGGACTAA (2) GAGTCAGCAT GCTTCTGACC TAAAACAATA (3) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAAAG TTCATAAATA (3) TTGGAAATCT (4) 59.6 0.0596 E18.5 retina ATACACTCCA CAGTGTGAGA CGGGAGGAGA (2) GAGTCAGCAT GCCAATAAAA (2) GCTTCTGACC TATTAAAAAA (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAAAG TTCATAAATA (3) TTGGAAATCT (4) 43.6 0.0436 P0.5 retina AATCTGGCTG ACAACACAGG (4) ATACACTCCA CGGGAGGAGA (2) GAAGGACTAA (2) GAGCCCGGGA GAGTCAGCAT GCCAATAAAA (2) GCTGTCCTCA GTCATAGCTG (2) TATTAAAAAA (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAATA (3) 68.8 0.0688 P2.5 retina AATCTGGCTG ACAACACAGG (4) AGGGGAGGGG (2) CAAGCCAGTC CGGGAGGAGA (2) GAAGGACTAA (2) GAGTCAGCAT GCCGAGGGTA GGGGGGGCTT GTCAAACAGA GTCATAGCTG (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTATAAAAAA TTCATAAAAG TTCTCTGCCA (3) 69.1 0.0691 P4.5 retina AATAAAAATT AATCTGGCTG ATACACTCCA ATCCACTCCA CCACAGAGAG GAGAAGAGGA GAGCCCGGGA GAGCCTGGGA GAGTCAGCAT GCCAATAAAA (2) GGGGGGGCTT GTCATAGCTG (2) TATTAAAAAA (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTATAAAAAA TTCATAAATA (3) TTCTCTGCCA (3) 67.7 0.0677 P6.5 retina AATCTGGCTG ATTAAAATTA (3) CAAGCCAGTC CAGCTGAAAA (3) CCACAGAGAG CTGTCCTCAA GAAGGACTAA (2) GAGTCAGCAT GCCAATAAAA (2) GGAATCTGGA GGGGGGGCTT GTCATAGCTG (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAATA (3) TTCTCTGCCA (3) TTGGAAATCT (4) 66.9 0.0669 P10.5 crx- retina AATAAAAATT AATCTGGCTG ATACACTCCA GAGTCAGCAT TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAAAG TTCATAAATA (3) TTGGAAATCT (4) 70.8 0.0708 P10.5 crx+ retina AATCTGGCTG AGGGGAGGGG (2) ATACACTCCA CAGCTGAAAA (3) CCACAGAGAG GAAGGACTAA (2) GACCACGATG GAGAAGAGGA GAGCCTGGGA GAGTCAGCAT GCAGTCAGCA GCCAATAAAA (2) GCTGTCCTCA GCTTCTGACC GTCAAACAGA TCAGTTCTTG TTAGGTTCGG (3) TTCATAAAAG TTCATAAATA (3) 78.4 0.0784 Adult retinal AATCTGGCTG CAAGCCAGTC CGGGAGGAGA (2) CTGTCCTCAA GAAGGACTAA (2) GACCACGATG GAGAAGAGGA GAGCCCGGGA GAGTCAGCAT GCCAATAAAA (2) GCTGTCCTCA GTCATAGCTG (2) TAAAACAATA (3) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) TTCATAAAAG TTCATAAATA (3) 70.9 0.0709 ONL AATCTGGCTG ATACACTCCA ATTAAAATTA (3) CTGTCCTCAA GAGTCAGCAT GCAGTCAGCA GCCAATAAAA (2) GTCATAGCTG (2) TAAAACAATA (3) TATTAAAAAA (2) TCAGTTCTTG TGATGTTGGA (3) TTAGGTTCGG (3) 61.1 0.0611