Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.213000	Pkn1	protein kinase N1	8	8 38.0 cM	320795
Gene Ontology	ATP binding | cytoplasm | cytoplasmic vesicle | hyperosmotic response | intracellular | kinase activity | peptidase activity | protein kinase activity | protein serine/threonine kinase activity | protein targeting | signal transduction | transferase activity
Human Homolog	PKN1[protein kinase N1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 86 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC GAACCCCAGG (6) 4.9 0.0049 P8 Cb GC GCCTCTGAAG (2) 3.3 0.0033 P8 Cb GC CAGCTTCGAA (4) 1.6 0.0016 P8 Cb GC CATTTTCAGC (6) 1.6 0.0016 P8 Cb GC GCCTCTGCAG (7) 1.6 0.0016 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma CAGCTTCGAA (4) 4.6 0.0046 Cb medulloblastoma CTGTCAAATA 2.3 0.0023 Cb medulloblastoma GACCCAGGCT (5) 2.3 0.0023 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture GACCCAGGCT (5) 9.1 0.0091 P8 GC+1d culture GGGGATCTGG (6) 5.7 0.0057 P8 GC+1d culture AGAAGGCTAC (2) 1.1 0.0011 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture CTGTAAATAC (2) 4.7 0.0047 P8 GC+SHH+1d culture CAGCTTCGAA (4) 2.3 0.0023 P8 GC+SHH+1d culture GACCCAGGCT (5) 2.3 0.0023 P8 GC+SHH+1d culture GCCTCACTCC 1.2 0.0012 P8 GC+SHH+1d culture GCCTCTGCAG (7) 1.2 0.0012 P8 GC+SHH+1d culture GGGGATCTGG (6) 1.2 0.0012 3T3 fibroblasts CAGCTTCGAA (4) 3.5 0.0035 3T3 fibroblasts GACCCAGGCT (5) 3.5 0.0035 3T3 fibroblasts GCCTCTGCAG (7) 3.5 0.0035 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex CAGCTTCGAA (4) 4.5 0.0045 P1 cortex CTGTAAATAC (2) 4.5 0.0045 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus CTGTAAATAC (2) 10.9 0.0109 Hypothalamus GACCCAGGCT (5) 3.6 0.0036 Hypothalamus CAGCTTCGAA (4) 1.8 0.0018 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina AGAAGGCTAC (2) 3.8 0.0038 E12.5 retina GACCCAGGCT (5) 3.8 0.0038 E12.5 retina GCAGCAGCAG (5) 3.8 0.0038 E12.5 retina CAGCTTCGAA (4) 1.9 0.0019 E12.5 retina CATTTTCAGC (6) 1.9 0.0019 E12.5 retina CTGTAAATAC (2) 1.9 0.0019 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina GACCCAGGCT (5) 3.6 0.0036 E14.5 retina CAGCTTCGAA (4) 1.8 0.0018 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina GACCCAGGCT (5) 1.8 0.0018 E16.5 retina GCAGCAGCAG (5) 1.8 0.0018 E16.5 retina GCCTCTGCAG (7) 1.8 0.0018 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina CAGCTTCGAA (4) 1.8 0.0018 E18.5 retina GCCTCTGCAG (7) 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina CAGCTTCGAA (4) 2 0.002 P0.5 retina GGGGATCTGG (6) 2 0.002 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina CAGCTTCGAA (4) 1.8 0.0018 P2.5 retina CTGTAAATAC (2) 1.8 0.0018 P2.5 retina GACCCAGGCT (5) 1.8 0.0018 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina GACCCAGGCT (5) 4 0.004 P4.5 retina GCCTCACTCC 2 0.002 P4.5 retina GCCTCTGAAG (2) 2 0.002 P4.5 retina GGGGATCTGG (6) 2 0.002 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina GACCCAGGCT (5) 5 0.005 P6.5 retina TGCACAACCT 3.3 0.0033 P6.5 retina CAGCTTCGAA (4) 1.7 0.0017 P6.5 retina CATTTTCAGC (6) 1.7 0.0017 P6.5 retina CTGTAAATAC (2) 1.7 0.0017 P6.5 retina CTGTCAAATA 1.7 0.0017 P6.5 retina GGGGATCTGG (6) 1.7 0.0017 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina GACCCAGGCT (5) 5.6 0.0056 P10.5 crx- retina CAGCTTCGAA (4) 3.7 0.0037 P10.5 crx- retina CTGTCAAATA 1.9 0.0019 P10.5 crx- retina GCCTCACTCC 1.9 0.0019 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina CAGCTTCGAA (4) 3.8 0.0038 P10.5 crx+ retina CTGTCAAATA 1.9 0.0019 P10.5 crx+ retina GCAGCAGCAG (5) 1.9 0.0019 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal GTGGGGTGGC (3) 3.7 0.0037 Adult retinal CAGCTTCGAA (4) 1.9 0.0019 Adult retinal GACCCAGGCT (5) 1.9 0.0019 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL GTGGGGTGGC (3) 3.8 0.0038 ONL TGCACAACCT 3.8 0.0038 ONL GCAGCAGCAG (5) 1.9 0.0019