Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.219793	Ssrp1	structure specific recognition protein 1	2	2 47.8 cM	20833
Gene Ontology	chromatin | DNA binding | nucleus | regulation of transcription, DNA-dependent
Human Homolog	SSRP1[structure specific recognition protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAAGTCAGG (2) 13.1 0.0131 P8 Cb GC GGCAGACCTT (4) 11.4 0.0114 P8 Cb GC AAAGAGTATG (3) 1.6 0.0016 P8 Cb GC AAGCACTTGT (2) 1.6 0.0016 Cb medulloblastoma GGCAGACCTT (4) 9.2 0.0092 Cb medulloblastoma CCAAGTCAGG (2) 6.9 0.0069 Cb medulloblastoma AAAGAGTATG (3) 2.3 0.0023 Cb medulloblastoma AACCCTGCTG (3) 2.3 0.0023 Cb medulloblastoma AAGCACTTGT (2) 2.3 0.0023 Cb medulloblastoma TGCGAGGCCC (3) 2.3 0.0023 P8 GC+1d culture CCAAGTCAGG (2) 10.3 0.0103 P8 GC+1d culture AACCCTGCTG (3) 5.7 0.0057 P8 GC+1d culture GCAGAGACAT (5) 3.4 0.0034 P8 GC+1d culture AAGCACTTGT (2) 1.1 0.0011 P8 GC+1d culture CTGAAATATC (3) 1.1 0.0011 P8 GC+1d culture GAGTTTGGGG (7) 1.1 0.0011 P8 GC+1d culture GGCAGACCTT (4) 1.1 0.0011 P8 GC+1d culture TGCGAGGCCC (3) 1.1 0.0011 P8 GC+SHH+1d culture CCAAGTCAGG (2) 11.7 0.0117 P8 GC+SHH+1d culture GGCAGACCTT (4) 5.9 0.0059 P8 GC+SHH+1d culture AAGCACTTGT (2) 3.5 0.0035 P8 GC+SHH+1d culture AACCCTGCTG (3) 2.3 0.0023 P8 GC+SHH+1d culture GCAGAGACAT (5) 2.3 0.0023 P8 GC+SHH+1d culture CCAAAGTCAG (2) 1.2 0.0012 3T3 fibroblasts CCAAGTCAGG (2) 17.5 0.0175 3T3 fibroblasts AACCCTGCTG (3) 14 0.014 3T3 fibroblasts GCAGAGACAT (5) 10.5 0.0105 3T3 fibroblasts GGCAGACCTT (4) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex CCAAGTCAGG (2) 24.7 0.0247 E15 cortex GGCAGACCTT (4) 9.9 0.0099 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex GGCAGACCTT (4) 18.2 0.0182 P1 cortex GCAGAGACAT (5) 9.1 0.0091 P1 cortex AAAGAGTATG (3) 4.5 0.0045 P1 cortex ACAGCAACGA (2) 4.5 0.0045 P1 cortex CCAAGTCAGG (2) 4.5 0.0045 Hypothalamus AACCCTGCTG (3) 3.6 0.0036 Hypothalamus ACCCCTTCTG (2) 3.6 0.0036 Hypothalamus CCAAGTCAGG (2) 3.6 0.0036 Hypothalamus GGCAGACCTT (4) 3.6 0.0036 Hypothalamus AGCCCTGGTG (4) 1.8 0.0018 Hypothalamus GAGTTTGGGG (7) 1.8 0.0018 Hypothalamus GCAGAGACAT (5) 1.8 0.0018 E12.5 retina CCAAGTCAGG (2) 24.4 0.0244 E12.5 retina GCAGAGACAT (5) 13.1 0.0131 E12.5 retina AAGCACTTGT (2) 3.8 0.0038 E12.5 retina AAAGAGTATG (3) 1.9 0.0019 E12.5 retina CTGAAATATC (3) 1.9 0.0019 E14.5 retina GCAGAGACAT (5) 14.6 0.0146 E14.5 retina CCAAGTCAGG (2) 5.5 0.0055 E14.5 retina AAAGAGTATG (3) 1.8 0.0018 E14.5 retina AAGCACTTGT (2) 1.8 0.0018 E14.5 retina CTGAAATATC (3) 1.8 0.0018 E14.5 retina GGCAGACCTT (4) 1.8 0.0018 E16.5 retina GCAGAGACAT (5) 29 0.029 E16.5 retina CCAAGTCAGG (2) 9.1 0.0091 E16.5 retina GGCAGACCTT (4) 3.6 0.0036 E16.5 retina AAGCACTTGT (2) 1.8 0.0018 E16.5 retina GGGAAGACCT (4) 1.8 0.0018 E18.5 retina CCAAGTCAGG (2) 12.7 0.0127 E18.5 retina AAAGAGTATG (3) 3.6 0.0036 E18.5 retina GGCAGACCTT (4) 3.6 0.0036 E18.5 retina AAGCACTTGT (2) 1.8 0.0018 E18.5 retina GCAGAGACAT (5) 1.8 0.0018 P0.5 retina CCAAGTCAGG (2) 29.4 0.0294 P0.5 retina AAAGAGTATG (3) 9.8 0.0098 P0.5 retina GGCAGACCTT (4) 7.9 0.0079 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AACCCTGCTG (3) 2 0.002 P2.5 retina CCAAGTCAGG (2) 7 0.007 P2.5 retina GGGAAGACCT (4) 3.5 0.0035 P2.5 retina AACCCTGCTG (3) 1.8 0.0018 P2.5 retina CCAAAGTCAG (2) 1.8 0.0018 P2.5 retina GGCAGACCTT (4) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGCGAGGCCC (3) 1.8 0.0018 P4.5 retina CCAAGTCAGG (2) 5.9 0.0059 P4.5 retina AACCCTGCTG (3) 2 0.002 P4.5 retina CTGAAATATC (3) 2 0.002 P4.5 retina GGCAGACCTT (4) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina CCAAGTCAGG (2) 11.7 0.0117 P6.5 retina CTGAAATATC (3) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina AAAAGCACTT 1.7 0.0017 P6.5 retina AAGCACTTGT (2) 1.7 0.0017 P6.5 retina GGCAGACCTT (4) 1.7 0.0017 P6.5 retina GGGAAGACCT (4) 1.7 0.0017 P10.5 crx- retina GGCAGACCTT (4) 20.4 0.0204 P10.5 crx- retina CCAAGTCAGG (2) 5.6 0.0056 P10.5 crx- retina AAAAGCACTT 1.9 0.0019 P10.5 crx- retina AACCCTGCTG (3) 1.9 0.0019 P10.5 crx- retina AGCCCTGGTG (4) 1.9 0.0019 P10.5 crx- retina CCAAAGTCAG (2) 1.9 0.0019 P10.5 crx- retina GCAGAGACAT (5) 1.9 0.0019 P10.5 crx- retina GGGAAGACCT (4) 1.9 0.0019 P10.5 crx+ retina CCAAGTCAGG (2) 11.5 0.0115 P10.5 crx+ retina CTGAAATATC (3) 9.6 0.0096 P10.5 crx+ retina GGCAGACCTT (4) 7.7 0.0077 P10.5 crx+ retina GCAGAGACAT (5) 3.8 0.0038 P10.5 crx+ retina ACAGCAACGA (2) 1.9 0.0019 P10.5 crx+ retina ACCCCTTCTG (2) 1.9 0.0019 P10.5 crx+ retina AGCCCTGGTG (4) 1.9 0.0019 P10.5 crx+ retina GAGTTTGGGG (7) 1.9 0.0019 Adult retinal CCAAGTCAGG (2) 7.4 0.0074 Adult retinal CTGAAATATC (3) 5.6 0.0056 Adult retinal AACCCTGCTG (3) 3.7 0.0037 Adult retinal GCAGAGACAT (5) 3.7 0.0037 Adult retinal GGCAGACCTT (4) 3.7 0.0037 Adult retinal AAAGAGTATG (3) 1.9 0.0019 Adult retinal ACAGCAACGA (2) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AACCCTGCTG (3) 3.8 0.0038 ONL CCAAGTCAGG (2) 3.8 0.0038 ONL CTGAAATATC (3) 3.8 0.0038 ONL AAAAGCACTT 1.9 0.0019 ONL AAAGAGTATG (3) 1.9 0.0019