Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.221244
2610100L16Rik
RIKEN cDNA 2610100L16 gene
3
70441
Mm.221244
A930005K07Rik
RIKEN cDNA A930005K07 gene
3
109217
Mm.221244
6430547I21Rik
RIKEN cDNA 6430547I21 gene
3
320521
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 85 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CTGGAACTTC
(
9
)
3.3
0.0033
P8 Cb GC
TCATTAAAAA
(
8
)
1.6
0.0016
P8 Cb GC
TTTGTATGTC
(
4
)
1.6
0.0016
Cb medulloblastoma
GTAGCCTTGA
(
5
)
2.3
0.0023
Cb medulloblastoma
TCATTAAAAA
(
8
)
2.3
0.0023
P8 GC+1d culture
TTTGTATGTC
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
CAGGTGGAAA (
5
)
1.2
0.0012
P8 GC+SHH+1d culture
CGAGTCCTTT
(
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTGTATGTC
(
4
)
1.2
0.0012
3T3 fibroblasts
CTGGAACTTC
(
9
)
3.5
0.0035
3T3 fibroblasts
GTAGCCTTGA
(
5
)
3.5
0.0035
P1 cortex
CTTGAATTTC
(
3
)
4.5
0.0045
P1 cortex
GAACATTTTC (
5
)
4.5
0.0045
P1 cortex
TTGTGAAGCA
(
3
)
4.5
0.0045
Hypothalamus
TTGTGAAGCA
(
3
)
3.6
0.0036
Hypothalamus
ATGGAAAGAA (
12
)
1.8
0.0018
Hypothalamus
CAGGTGGAAA (
5
)
1.8
0.0018
Hypothalamus
CTGGAACTTC
(
9
)
1.8
0.0018
Hypothalamus
TCATTAAAAA
(
8
)
1.8
0.0018
E12.5 retina
CTGGAACTTC
(
9
)
1.9
0.0019
E12.5 retina
CTTGAATTTC
(
3
)
1.9
0.0019
E12.5 retina
GTGTGGTCCT
(
5
)
1.9
0.0019
E14.5 retina
TTGTGAAGCA
(
3
)
10.9
0.0109
E14.5 retina
ATGGAAAGAA (
12
)
1.8
0.0018
E14.5 retina
ATTAAACCCA
(
4
)
1.8
0.0018
E14.5 retina
CGAGTCCTTT
(
4
)
1.8
0.0018
E14.5 retina
GTAGCCTTGA
(
5
)
1.8
0.0018
E14.5 retina
TCATTAAAAA
(
8
)
1.8
0.0018
E16.5 retina
TTGTGAAGCA
(
3
)
9.1
0.0091
E16.5 retina
TTGAAAAGTT
(
3
)
1.8
0.0018
E18.5 retina
CTGGAACTTC
(
9
)
3.6
0.0036
E18.5 retina
CCTATTTTTC (
4
)
1.8
0.0018
E18.5 retina
TAATATGAAA
(
5
)
1.8
0.0018
E18.5 retina
TTAAATCAAC
(
3
)
1.8
0.0018
E18.5 retina
TTGTGAAGCA
(
3
)
1.8
0.0018
P0.5 retina
TTGTGAAGCA
(
3
)
27.5
0.0275
P0.5 retina
CTGGAACTTC
(
9
)
5.9
0.0059
P0.5 retina
ATGGAAAGAA (
12
)
2
0.002
P0.5 retina
CCTATTTTTC (
4
)
2
0.002
P0.5 retina
CTTGAATTTC
(
3
)
2
0.002
P0.5 retina
TCATTAAAAA
(
8
)
2
0.002
P2.5 retina
TTGTGAAGCA
(
3
)
17.6
0.0176
P2.5 retina
ATTAAACCCA
(
4
)
3.5
0.0035
P2.5 retina
CGAGTCCTTT
(
4
)
1.8
0.0018
P4.5 retina
TTGTGAAGCA
(
3
)
27.7
0.0277
P4.5 retina
CTGGAACTTC
(
9
)
7.9
0.0079
P4.5 retina
GTGTGGTCCT
(
5
)
4
0.004
P6.5 retina
TTGTGAAGCA
(
3
)
63.4
0.0634
P6.5 retina
CTGGAACTTC
(
9
)
3.3
0.0033
P6.5 retina
ATGGAAAGAA (
12
)
1.7
0.0017
P6.5 retina
TAATATGAAA
(
5
)
1.7
0.0017
P6.5 retina
TTAAATCAAC
(
3
)
1.7
0.0017
P10.5 crx- retina
TTGTGAAGCA
(
3
)
48.3
0.0483
P10.5 crx- retina
TTAAATCAAC
(
3
)
16.7
0.0167
P10.5 crx- retina
ATTAAACCCA
(
4
)
1.9
0.0019
P10.5 crx- retina
CAGGTGGAAA (
5
)
1.9
0.0019
P10.5 crx- retina
CTGGAACTTC
(
9
)
1.9
0.0019
P10.5 crx- retina
GTGTGGTCCT
(
5
)
1.9
0.0019
P10.5 crx- retina
TAATATGAAA
(
5
)
1.9
0.0019
P10.5 crx- retina
TTGAAAAGTT
(
3
)
1.9
0.0019
P10.5 crx+ retina
TTGTGAAGCA
(
3
)
53.8
0.0538
P10.5 crx+ retina
CGAGTCCTTT
(
4
)
7.7
0.0077
P10.5 crx+ retina
GTCCTCTGCA (
5
)
7.7
0.0077
P10.5 crx+ retina
GTGTGGTCCT
(
5
)
5.8
0.0058
P10.5 crx+ retina
TTAAATCAAC
(
3
)
3.8
0.0038
P10.5 crx+ retina
CTGGAACTTC
(
9
)
1.9
0.0019
P10.5 crx+ retina
CTTGAATTTC
(
3
)
1.9
0.0019
P10.5 crx+ retina
GAACATTTTC (
5
)
1.9
0.0019
P10.5 crx+ retina
TAATATGAAA
(
5
)
1.9
0.0019
P10.5 crx+ retina
TTGAAAAGTT
(
3
)
1.9
0.0019
Adult retinal
TTGTGAAGCA
(
3
)
59.2
0.0592
Adult retinal
CTTGAATTTC
(
3
)
7.4
0.0074
Adult retinal
CTGGAACTTC
(
9
)
5.6
0.0056
Adult retinal
CCTATTTTTC (
4
)
3.7
0.0037
Adult retinal
TTAAATCAAC
(
3
)
3.7
0.0037
Adult retinal
GAACATTTTC (
5
)
1.9
0.0019
Adult retinal
GTGTGGTCCT
(
5
)
1.9
0.0019
ONL
TTGTGAAGCA
(
3
)
40.2
0.0402
ONL
TTAAATCAAC
(
3
)
5.7
0.0057
ONL
CCTATTTTTC (
4
)
3.8
0.0038
ONL
TAATATGAAA
(
5
)
3.8
0.0038
ONL
TTGAAAAGTT
(
3
)
3.8
0.0038
ONL
CAGGTGGAAA (
5
)
1.9
0.0019
ONL
GAACATTTTC (
5
)
1.9
0.0019
ONL
TTTGTATGTC
(
4
)
1.9
0.0019
