Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22708	Serpinh1	serine (or cysteine) proteinase inhibitor, clade H, member 1	7		12406
Gene Ontology	endopeptidase inhibitor activity | endoplasmic reticulum | extracellular space | heat shock protein activity | protein binding | protein folding | response to heat | response to unfolded protein | serine-type endopeptidase inhibitor activity
Human Homolog	SERPINH1[serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)] | SERPINH1[serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 197 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GCCTGTGGCC (2) 9.8 0.0098 P8 Cb GC AACTTTTGTT (3) 8.2 0.0082 P8 Cb GC TCCTAACTTA (3) 6.5 0.0065 P8 Cb GC GAACTTATGT (2) 4.9 0.0049 P8 Cb GC GTGAAAAAAA (22) 4.9 0.0049 P8 Cb GC CGCCTCTCTC (2) 3.3 0.0033 P8 Cb GC GTGACAAAAA (11) 3.3 0.0033 P8 Cb GC AACCTTTGTG 1.6 0.0016 P8 Cb GC ACCTGCAAAA (2) 1.6 0.0016 P8 Cb GC CTCACACAAA (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GTGAAAAAAA (22) 43.9 0.0439 Cb medulloblastoma ACCTGCAAAA (2) 9.2 0.0092 Cb medulloblastoma GAACTTATGT (2) 4.6 0.0046 Cb medulloblastoma GTGACAAAAA (11) 4.6 0.0046 Cb medulloblastoma AACTTTTGTT (3) 2.3 0.0023 Cb medulloblastoma GCCTGTGGCC (2) 2.3 0.0023 Cb medulloblastoma GGGAAGGGGC (6) 2.3 0.0023 Cb medulloblastoma TCCTAACTTA (3) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture GCCTGTGGCC (2) 19.4 0.0194 P8 GC+1d culture AACTTTTGTT (3) 17.1 0.0171 P8 GC+1d culture TCCTAACTTA (3) 11.4 0.0114 P8 GC+1d culture GAACTTATGT (2) 9.1 0.0091 P8 GC+1d culture GTGAAAAAAA (22) 6.8 0.0068 P8 GC+1d culture ACCTGCAAAA (2) 4.6 0.0046 P8 GC+1d culture CGCCTCTCTC (2) 3.4 0.0034 P8 GC+1d culture AACCTTTGTG 1.1 0.0011 P8 GC+1d culture CCTGCCCTAG 1.1 0.0011 P8 GC+1d culture GAGCCCAGAT 1.1 0.0011 P8 GC+1d culture GCAGCCAGAT 1.1 0.0011 P8 GC+1d culture GGGAACCCCT (9) 1.1 0.0011 P8 GC+1d culture GGGCCCAAGC (13) 1.1 0.0011 P8 GC+1d culture GTGGACCCCG (2) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture GCCTGTGGCC (2) 15.2 0.0152 P8 GC+SHH+1d culture GTGAAAAAAA (22) 10.5 0.0105 P8 GC+SHH+1d culture TCCTAACTTA (3) 10.5 0.0105 P8 GC+SHH+1d culture GAACTTATGT (2) 8.2 0.0082 P8 GC+SHH+1d culture AACTTTTGTT (3) 4.7 0.0047 P8 GC+SHH+1d culture ACCTGCAAAA (2) 3.5 0.0035 P8 GC+SHH+1d culture CGCCTCTCTC (2) 2.3 0.0023 P8 GC+SHH+1d culture GCAGCCAGAT 1.2 0.0012 P8 GC+SHH+1d culture GGGAAGGGGC (6) 1.2 0.0012 P8 GC+SHH+1d culture GTGACAAAAA (11) 1.2 0.0012 P8 GC+SHH+1d culture TCTGGGAAGA (4) 1.2 0.0012 3T3 fibroblasts GCCTGTGGCC (2) 94.6 0.0946 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CGCCTCTCTC (2) 28 0.028 3T3 fibroblasts GGGAAGGGGC (6) 14 0.014 3T3 fibroblasts CCCCCACCAC (4) 7 0.007 3T3 fibroblasts AACCTTTGTG 3.5 0.0035 3T3 fibroblasts AACTTTTGTT (3) 3.5 0.0035 3T3 fibroblasts GAACTTATGT (2) 3.5 0.0035 3T3 fibroblasts TGGTGCACAC (2) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CCTGCCCTAG 19.8 0.0198 E15 cortex ACCTGCAAAA (2) 9.9 0.0099 E15 cortex GAACTTATGT (2) 9.9 0.0099 E15 cortex GCCTGTGGCC (2) 9.9 0.0099 E15 cortex GGCAAAGCCC (3) 9.9 0.0099 E15 cortex TCCTAACTTA (3) 9.9 0.0099 E15 cortex CCCCCACCAC (4) 4.9 0.0049 E15 cortex CGCCTCTCTC (2) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GGGAACCCCT (9) 9.1 0.0091 P1 cortex TCCTAACTTA (3) 9.1 0.0091 P1 cortex CGCCTCTCTC (2) 4.5 0.0045 P1 cortex GAACTTATGT (2) 4.5 0.0045 P1 cortex GCCTGTGGCC (2) 4.5 0.0045 P1 cortex GGGAAGGGGC (6) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GTGAAAAAAA (22) 18.1 0.0181 Hypothalamus AACTTTTGTT (3) 1.8 0.0018 Hypothalamus ACCTGCAAAA (2) 1.8 0.0018 Hypothalamus GAACTTATGT (2) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AACTTTTGTT (3) 20.7 0.0207 E12.5 retina GCCTGTGGCC (2) 15 0.015 E12.5 retina GTGAAAAAAA (22) 11.3 0.0113 E12.5 retina GAACTTATGT (2) 9.4 0.0094 E12.5 retina GTGACAAAAA (11) 5.6 0.0056 E12.5 retina GAGCCCAGAT 1.9 0.0019 E12.5 retina GGGAACCCCT (9) 1.9 0.0019 E12.5 retina TCCTAACTTA (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GTGAAAAAAA (22) 12.8 0.0128 E14.5 retina GCCTGTGGCC (2) 10.9 0.0109 E14.5 retina AACTTTTGTT (3) 7.3 0.0073 E14.5 retina GGCAAAGCCC (3) 3.6 0.0036 E14.5 retina GAACTTATGT (2) 1.8 0.0018 E14.5 retina GCAGCCAGAT 1.8 0.0018 E14.5 retina GGGAACCCCT (9) 1.8 0.0018 E14.5 retina GTGACAAAAA (11) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GCCTGTGGCC (2) 32.6 0.0326 E16.5 retina GAGCCCAGAT 5.4 0.0054 E16.5 retina GGGAACCCCT (9) 5.4 0.0054 E16.5 retina GTGAAAAAAA (22) 5.4 0.0054 E16.5 retina GAACTTATGT (2) 3.6 0.0036 E16.5 retina GGCAAAGCCC (3) 3.6 0.0036 E16.5 retina TCCTAACTTA (3) 3.6 0.0036 E16.5 retina AACTTTTGTT (3) 1.8 0.0018 E16.5 retina ACCTGCAAAA (2) 1.8 0.0018 E16.5 retina GCAGCCAGAT 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GTGAAAAAAA (22) 20 0.02 E18.5 retina GCCTGTGGCC (2) 14.6 0.0146 E18.5 retina GAACTTATGT (2) 5.5 0.0055 E18.5 retina AACTTTTGTT (3) 3.6 0.0036 E18.5 retina GCAGCCAGAT 3.6 0.0036 E18.5 retina GGCAAAGCCC (3) 3.6 0.0036 E18.5 retina GGGAACCCCT (9) 3.6 0.0036 E18.5 retina CGCCTCTCTC (2) 1.8 0.0018 E18.5 retina CTCACACAAA (3) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GCCTGTGGCC (2) 19.6 0.0196 P0.5 retina GAACTTATGT (2) 13.7 0.0137 P0.5 retina GGGAACCCCT (9) 11.8 0.0118 P0.5 retina AACTTTTGTT (3) 7.9 0.0079 P0.5 retina GGGCCCAAGC (13) 7.9 0.0079 P0.5 retina GTGAAAAAAA (22) 7.9 0.0079 P0.5 retina ACCTGCAAAA (2) 2 0.002 P0.5 retina GAGCCCAGAT 2 0.002 P0.5 retina GGGAAGGGGC (6) 2 0.002 P0.5 retina GTGGACCCCG (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GCCTGTGGCC (2) 17.6 0.0176 P2.5 retina GTGAAAAAAA (22) 10.6 0.0106 P2.5 retina GAACTTATGT (2) 7 0.007 P2.5 retina ACCTGCAAAA (2) 3.5 0.0035 P2.5 retina GGGAACCCCT (9) 3.5 0.0035 P2.5 retina GGGAAGGGGC (6) 3.5 0.0035 P2.5 retina AACTTTTGTT (3) 1.8 0.0018 P2.5 retina CCTGCCCTAG 1.8 0.0018 P2.5 retina GTGACAAAAA (11) 1.8 0.0018 P2.5 retina TCCTAACTTA (3) 1.8 0.0018 P2.5 retina TCTGGGAAGA (4) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina GTGAAAAAAA (22) 23.8 0.0238 P4.5 retina GCCTGTGGCC (2) 15.9 0.0159 P4.5 retina GAACTTATGT (2) 7.9 0.0079 P4.5 retina GTGACAAAAA (11) 5.9 0.0059 P4.5 retina AACTTTTGTT (3) 4 0.004 P4.5 retina CGCCTCTCTC (2) 4 0.004 P4.5 retina GGGAACCCCT (9) 4 0.004 P4.5 retina TCTGGGAAGA (4) 4 0.004 P4.5 retina ACCTGCAAAA (2) 2 0.002 P4.5 retina CCTGCCCTAG 2 0.002 P4.5 retina CTCACACAAA (3) 2 0.002 P4.5 retina GTGGACCCCG (2) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GCCTGTGGCC (2) 13.3 0.0133 P6.5 retina GAACTTATGT (2) 8.3 0.0083 P6.5 retina GTGAAAAAAA (22) 5 0.005 P6.5 retina GTGGACCCCG (2) 3.3 0.0033 P6.5 retina ACCTGCAAAA (2) 1.7 0.0017 P6.5 retina CTCACACAAA (3) 1.7 0.0017 P6.5 retina GGCAAAGCCC (3) 1.7 0.0017 P6.5 retina TGGTGCACAC (2) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AACTTTTGTT (3) 11.1 0.0111 P10.5 crx- retina GCCTGTGGCC (2) 9.3 0.0093 P10.5 crx- retina GGCAAAGCCC (3) 5.6 0.0056 P10.5 crx- retina TCCTAACTTA (3) 5.6 0.0056 P10.5 crx- retina GAACTTATGT (2) 3.7 0.0037 P10.5 crx- retina GTGAAAAAAA (22) 3.7 0.0037 P10.5 crx- retina TCTGGGAAGA (4) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina GCCTGTGGCC (2) 23.1 0.0231 P10.5 crx+ retina GTGAAAAAAA (22) 5.8 0.0058 P10.5 crx+ retina GAACTTATGT (2) 3.8 0.0038 P10.5 crx+ retina TCCTAACTTA (3) 3.8 0.0038 P10.5 crx+ retina AACTTTTGTT (3) 1.9 0.0019 P10.5 crx+ retina ACCTGCAAAA (2) 1.9 0.0019 P10.5 crx+ retina CCTGCCCTAG 1.9 0.0019 P10.5 crx+ retina GGGAACCCCT (9) 1.9 0.0019 P10.5 crx+ retina GTGACAAAAA (11) 1.9 0.0019 P10.5 crx+ retina GTGGACCCCG (2) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GTGAAAAAAA (22) 3.7 0.0037 Adult retinal AACTTTTGTT (3) 1.9 0.0019 Adult retinal ACCTGCAAAA (2) 1.9 0.0019 Adult retinal CCTGCCCTAG 1.9 0.0019 Adult retinal GAACTTATGT (2) 1.9 0.0019 Adult retinal GCCTGTGGCC (2) 1.9 0.0019 Adult retinal GGGAACCCCT (9) 1.9 0.0019 Adult retinal TGGTGCACAC (2) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GCCTGTGGCC (2) 7.7 0.0077 ONL GTGAAAAAAA (22) 5.7 0.0057 ONL TCCTAACTTA (3) 5.7 0.0057 ONL GAACTTATGT (2) 3.8 0.0038 ONL AACTTTTGTT (3) 1.9 0.0019 ONL TCTGGGAAGA (4) 1.9 0.0019 ONL TGGTGCACAC (2) 1.9 0.0019