Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.234314	Clcn1	chloride channel 1	6	6 22.5 cM	12723
Gene Ontology	chloride transport | integral to membrane | ion channel activity | ion transport | membrane | transport | transporter activity | voltage-gated chloride channel activity | voltage-gated ion channel activity
Human Homolog	CLCN1[chloride channel 1, skeletal muscle (Thomsen disease, autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 25 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTGGAGAAGG 3.3 0.0033 Cb medulloblastoma TTGGAGAAGG 27.7 0.0277 Cb medulloblastoma GGAATAAACC 2.3 0.0023 Cb medulloblastoma GGGAAGCTCA 2.3 0.0023 P8 GC+1d culture TTGGAGAAGG 4.6 0.0046 P8 GC+SHH+1d culture TTGGAGAAGG 1.2 0.0012 P1 cortex TTGGAGAAGG 9.1 0.0091 Hypothalamus TTGGAGAAGG 7.2 0.0072 Hypothalamus CTAAGACTGA 1.8 0.0018 Hypothalamus GGAATAAACC 1.8 0.0018 Hypothalamus GGGAAGCTCA 1.8 0.0018 E16.5 retina TTGGAGAAGG 1.8 0.0018 E18.5 retina CTAAGACTGA 1.8 0.0018 E18.5 retina GGAATAAACC 1.8 0.0018 E18.5 retina TTGGAGAAGG 1.8 0.0018 P0.5 retina TTGGAGAAGG 2 0.002 P2.5 retina GGGAAGCTCA 1.8 0.0018 P2.5 retina TTGGAGAAGG 1.8 0.0018 P4.5 retina TTGGAGAAGG 5.9 0.0059 P6.5 retina GGAATAAACC 1.7 0.0017 P6.5 retina TTGGAGAAGG 1.7 0.0017 P10.5 crx- retina TTGGAGAAGG 1.9 0.0019 P10.5 crx+ retina TTGGAGAAGG 1.9 0.0019 Adult retinal TTGGAGAAGG 3.7 0.0037 Adult retinal CTAAGACTGA 1.9 0.0019