Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.234314	Clcn1	chloride channel 1	6	6 22.5 cM	12723
Gene Ontology	chloride transport | integral to membrane | ion channel activity | ion transport | membrane | transport | transporter activity | voltage-gated chloride channel activity | voltage-gated ion channel activity
Human Homolog	CLCN1[chloride channel 1, skeletal muscle (Thomsen disease, autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 34 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTATATAAT (2) TTGGAGAAGG 4.9 0.0049 Cb medulloblastoma GGAATAAACC GGGAAGCTCA TTGGAGAAGG 32.3 0.0323 P8 GC+1d culture TTGGAGAAGG 4.6 0.0046 P8 GC+SHH+1d culture TGTATATAAT (2) TTGGAGAAGG 2.4 0.0024 P1 cortex TGTATATAAT (2) TTGGAGAAGG 13.6 0.0136 Hypothalamus CTAAGACTGA GGAATAAACC GGGAAGCTCA TTGGAGAAGG 12.6 0.0126 E14.5 retina TGTATATAAT (2) 5.5 0.0055 E16.5 retina TGTATATAAT (2) TTGGAGAAGG 7.2 0.0072 E18.5 retina CTAAGACTGA GGAATAAACC TGTATATAAT (2) TTGGAGAAGG 9 0.009 P0.5 retina TTGGAGAAGG 2 0.002 P2.5 retina GGGAAGCTCA TGTATATAAT (2) TTGGAGAAGG 5.4 0.0054 P4.5 retina TGTATATAAT (2) TTGGAGAAGG 7.9 0.0079 P6.5 retina GGAATAAACC TTGGAGAAGG 3.4 0.0034 P10.5 crx- retina TTGGAGAAGG 1.9 0.0019 P10.5 crx+ retina TGTATATAAT (2) TTGGAGAAGG 5.7 0.0057 Adult retinal CTAAGACTGA TTGGAGAAGG 5.6 0.0056