Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.236256	Brca2	breast cancer 2	5	5 84.0 cM	12190
Gene Ontology	cytoplasm | DNA repair | nucleic acid binding | nucleus | protein binding | response to DNA damage stimulus
Human Homolog	BRCA2[breast cancer 2, early onset]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 65 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC CTCCCACCTT (15) 3.3 0.0033 P8 Cb GC AAGGACAGCA (5) 1.6 0.0016 P8 Cb GC CAAATAAAGA (3) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma CTCCCACCTT (15) 13.9 0.0139 Cb medulloblastoma CTCACAGAGA (7) 2.3 0.0023 Cb medulloblastoma TACCCAATAT (2) 2.3 0.0023 Cb medulloblastoma TCACAAGAAA (2) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture CTCCCACCTT (15) 9.1 0.0091 P8 GC+1d culture CAGCCTCCAC (2) 2.3 0.0023 P8 GC+1d culture CTCACAGAGA (7) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture CTCCCACCTT (15) 8.2 0.0082 P8 GC+SHH+1d culture CAAATAAAGA (3) 1.2 0.0012 P8 GC+SHH+1d culture CAGCCTCCAC (2) 1.2 0.0012 P8 GC+SHH+1d culture TCACAAGAAA (2) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 3T3 fibroblasts CTCCCACCTT (15) 10.5 0.0105 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex CTCCCACCTT (15) 9.9 0.0099 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex AAGGACAGCA (5) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus CTCCCACCTT (15) 9.1 0.0091 Hypothalamus CTCACAGAGA (7) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina CTCCCACCTT (15) 9.4 0.0094 E12.5 retina AAGGACAGCA (5) 1.9 0.0019 E12.5 retina TACCCAATAT (2) 1.9 0.0019 E12.5 retina TCACAAGAAA (2) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina CTCCCACCTT (15) 12.8 0.0128 E14.5 retina CTCACAGAGA (7) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina CTCCCACCTT (15) 9.1 0.0091 E16.5 retina CTCACAGAGA (7) 1.8 0.0018 E16.5 retina TCACAAGAAA (2) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina CTCCCACCTT (15) 14.6 0.0146 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina CTCCCACCTT (15) 11.8 0.0118 P0.5 retina CTCACAGAGA (7) 3.9 0.0039 P0.5 retina CAGCCTCCAC (2) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina CTCCCACCTT (15) 15.8 0.0158 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina CTCCCACCTT (15) 37.6 0.0376 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina CTCCCACCTT (15) 20 0.02 P6.5 retina TCACAAGAAA (2) 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina CTCCCACCTT (15) 13 0.013 P10.5 crx- retina CTCACAGAGA (7) 1.9 0.0019 P10.5 crx- retina TACCCAATAT (2) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina CTCCCACCTT (15) 21.1 0.0211 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal CTCCCACCTT (15) 35.2 0.0352 Adult retinal CAAATAAAGA (3) 1.9 0.0019 Adult retinal CAGCCTCCAC (2) 1.9 0.0019 Adult retinal TACCCAATAT (2) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL CTCCCACCTT (15) 15.3 0.0153