Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.236553	Ctsb	cathepsin B	14	14 28.0 cM	13030
Gene Ontology	cathepsin B activity | cysteine-type endopeptidase activity | cysteine-type peptidase activity | extracellular space | hydrolase activity | lysosome | mitochondrion | peroxidase activity | protein targeting | proteolysis and peptidolysis
Human Homolog	CTSB[cathepsin B]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 157 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTTTGCTGTG (2) 13.1 0.0131 P8 Cb GC AAAGCTTTTG (5) 4.9 0.0049 P8 Cb GC CTTGGATGGG (4) 3.3 0.0033 P8 Cb GC GCAGGCTGGA (3) 3.3 0.0033 P8 Cb GC GCAGGCTGGG (3) 3.3 0.0033 P8 Cb GC GCCTCCTCCT (6) 3.3 0.0033 P8 Cb GC AAAAGCCTTC (10) 1.6 0.0016 P8 Cb GC AGGGTGCTTC (2) 1.6 0.0016 P8 Cb GC CACTGGGAGA (2) 1.6 0.0016 P8 Cb GC CTAAATATCT (2) 1.6 0.0016 P8 Cb GC GCAGGGCTGG (6) 1.6 0.0016 P8 Cb GC GTTCTTGTAT (2) 1.6 0.0016 P8 Cb GC TAATCAAAAA 1.6 0.0016 P8 Cb GC TAGGTTGTTT 1.6 0.0016 Cb medulloblastoma GTTTGCTGTG (2) 23.1 0.0231 Cb medulloblastoma AAAGCTTTTG (5) 6.9 0.0069 Cb medulloblastoma ACAATGTAGC (2) 6.9 0.0069 Cb medulloblastoma GCAGGCTGGG (3) 6.9 0.0069 Cb medulloblastoma TAGCTTGTTT (5) 6.9 0.0069 Cb medulloblastoma GCAGGGCTGG (6) 4.6 0.0046 Cb medulloblastoma AAAAGCCTTC (10) 2.3 0.0023 Cb medulloblastoma GCTTGCTGTG (7) 2.3 0.0023 P8 GC+1d culture GTTTGCTGTG (2) 19.4 0.0194 P8 GC+1d culture TCCTCTCTCT (6) 6.8 0.0068 P8 GC+1d culture CTAAATATCT (2) 5.7 0.0057 P8 GC+1d culture GCCTCCTCCT (6) 5.7 0.0057 P8 GC+1d culture GCAGGCTGGG (3) 4.6 0.0046 P8 GC+1d culture AAAGCTTTTG (5) 3.4 0.0034 P8 GC+1d culture ACAATGTAGC (2) 2.3 0.0023 P8 GC+1d culture GTTCTTGTAT (2) 2.3 0.0023 P8 GC+1d culture AAGCTTTTGG 1.1 0.0011 P8 GC+1d culture AGGGTGCTTC (2) 1.1 0.0011 P8 GC+1d culture CTTGGATGGG (4) 1.1 0.0011 P8 GC+1d culture TAGCTTGTTT (5) 1.1 0.0011 P8 GC+SHH+1d culture GTTTGCTGTG (2) 19.9 0.0199 P8 GC+SHH+1d culture TCCTCTCTCT (6) 8.2 0.0082 P8 GC+SHH+1d culture AGGGTGCTTC (2) 5.9 0.0059 P8 GC+SHH+1d culture CTAAATATCT (2) 4.7 0.0047 P8 GC+SHH+1d culture AAGCTTTTGG 2.3 0.0023 P8 GC+SHH+1d culture GCAGGCTGGG (3) 2.3 0.0023 P8 GC+SHH+1d culture AAAAGCCTTC (10) 1.2 0.0012 P8 GC+SHH+1d culture AAAGCTTTTG (5) 1.2 0.0012 P8 GC+SHH+1d culture CACTGGGAGA (2) 1.2 0.0012 P8 GC+SHH+1d culture CTTGGATGGG (4) 1.2 0.0012 P8 GC+SHH+1d culture GCCTCCTCCT (6) 1.2 0.0012 3T3 fibroblasts TCCTCTCTCT (6) 10.5 0.0105 3T3 fibroblasts GCCTCCTCCT (6) 7 0.007 3T3 fibroblasts ACAATGTAGC (2) 3.5 0.0035 3T3 fibroblasts AGGGTGCTTC (2) 3.5 0.0035 3T3 fibroblasts GCTTGCTGTG (7) 3.5 0.0035 3T3 fibroblasts GTTTGCTGTG (2) 3.5 0.0035 E15 cortex TCCTCTCTCT (6) 9.9 0.0099 E15 cortex AAAGCTTTTG (5) 4.9 0.0049 E15 cortex AGGGTGCTTC (2) 4.9 0.0049 E15 cortex GTTTGCTGTG (2) 4.9 0.0049 P1 cortex GTTTGCTGTG (2) 9.1 0.0091 P1 cortex CTTGGATGGG (4) 4.5 0.0045 P1 cortex GTTCTTGTAT (2) 4.5 0.0045 P1 cortex TCCTCTCTCT (6) 4.5 0.0045 Hypothalamus GCCTCCTCCT (6) 14.5 0.0145 Hypothalamus TAGCTTGTTT (5) 12.7 0.0127 Hypothalamus GCAGGCTGGG (3) 9.1 0.0091 Hypothalamus AGGGTGCTTC (2) 3.6 0.0036 Hypothalamus GTTTGCTGTG (2) 3.6 0.0036 Hypothalamus CTTGGATGGG (4) 1.8 0.0018 Hypothalamus CTTGGTTGAG (2) 1.8 0.0018 Hypothalamus GCAGGGCTGG (6) 1.8 0.0018 Hypothalamus GGAGGCTGGA (3) 1.8 0.0018 E12.5 retina GCAGGCTGGG (3) 7.5 0.0075 E12.5 retina GTTTGCTGTG (2) 5.6 0.0056 E12.5 retina AGGGTGCTTC (2) 3.8 0.0038 E12.5 retina AAAGCTTTTG (5) 1.9 0.0019 E12.5 retina CACTGGGAGA (2) 1.9 0.0019 E14.5 retina GCCTCCTCCT (6) 54.7 0.0547 E14.5 retina GTTTGCTGTG (2) 9.1 0.0091 E14.5 retina GCAGGCTGGA (3) 1.8 0.0018 E14.5 retina GCAGGCTGGG (3) 1.8 0.0018 E14.5 retina TAGCTTGTTT (5) 1.8 0.0018 E14.5 retina TAGGTTGTTT 1.8 0.0018 E16.5 retina GCCTCCTCCT (6) 34.4 0.0344 E16.5 retina GCAGGCTGGG (3) 3.6 0.0036 E16.5 retina GTTTGCTGTG (2) 3.6 0.0036 E16.5 retina GAGACATCCT (5) 1.8 0.0018 E16.5 retina GCACTGGAGG (2) 1.8 0.0018 E16.5 retina TAGCTTGTTT (5) 1.8 0.0018 E16.5 retina TCCTCTCTCT (6) 1.8 0.0018 E18.5 retina GCCTCCTCCT (6) 21.8 0.0218 E18.5 retina AAAGCTTTTG (5) 1.8 0.0018 P0.5 retina TCCTCTCTCT (6) 9.8 0.0098 P0.5 retina GTTTGCTGTG (2) 3.9 0.0039 P0.5 retina AAAGCTTTTG (5) 2 0.002 P0.5 retina AGGGTGCTTC (2) 2 0.002 P0.5 retina GAGACATCCT (5) 2 0.002 P0.5 retina GCAGGCTGGG (3) 2 0.002 P0.5 retina GCCTCCTCCT (6) 2 0.002 P0.5 retina GGAGGCTGGA (3) 2 0.002 P2.5 retina GCCTCCTCCT (6) 7 0.007 P2.5 retina TCCTCTCTCT (6) 5.3 0.0053 P2.5 retina AGGGTGCTTC (2) 3.5 0.0035 P2.5 retina CTAAATATCT (2) 1.8 0.0018 P2.5 retina GAGACATCCT (5) 1.8 0.0018 P2.5 retina GCAGGCTGGG (3) 1.8 0.0018 P2.5 retina GTTTGCTGTG (2) 1.8 0.0018 P2.5 retina TAATCAAAAA 1.8 0.0018 P4.5 retina TAATCAAAAA 5.9 0.0059 P4.5 retina CTAAATATCT (2) 4 0.004 P4.5 retina GCCTCCTCCT (6) 4 0.004 P4.5 retina GTTTGCTGTG (2) 4 0.004 P4.5 retina AAAGCTTTTG (5) 2 0.002 P4.5 retina AGGGTGCTTC (2) 2 0.002 P4.5 retina GCAGGCTGGG (3) 2 0.002 P4.5 retina TCCTCTCTCT (6) 2 0.002 P6.5 retina GTTTGCTGTG (2) 6.7 0.0067 P6.5 retina GCCTCCTCCT (6) 5 0.005 P6.5 retina AGGGTGCTTC (2) 3.3 0.0033 P6.5 retina GCAGGCTGGG (3) 3.3 0.0033 P6.5 retina TCCTCTCTCT (6) 3.3 0.0033 P6.5 retina ACAATGTAGC (2) 1.7 0.0017 P6.5 retina GCTTGCTGTG (7) 1.7 0.0017 P10.5 crx- retina GTTTGCTGTG (2) 14.9 0.0149 P10.5 crx- retina GCCTCCTCCT (6) 9.3 0.0093 P10.5 crx- retina GCAGGCTGGG (3) 3.7 0.0037 P10.5 crx- retina AGGGTGCTTC (2) 1.9 0.0019 P10.5 crx- retina GCACTGGAGG (2) 1.9 0.0019 P10.5 crx- retina TAGCTTGTTT (5) 1.9 0.0019 P10.5 crx- retina TAGGTTGTTT 1.9 0.0019 P10.5 crx+ retina GTTTGCTGTG (2) 17.3 0.0173 P10.5 crx+ retina GCAGGCTGGG (3) 13.5 0.0135 P10.5 crx+ retina GCCTCCTCCT (6) 5.8 0.0058 P10.5 crx+ retina ACAATGTAGC (2) 3.8 0.0038 P10.5 crx+ retina AAAGCTTTTG (5) 1.9 0.0019 P10.5 crx+ retina AGGGTGCTTC (2) 1.9 0.0019 P10.5 crx+ retina CTTGGATGGG (4) 1.9 0.0019 P10.5 crx+ retina GCACTGGAGG (2) 1.9 0.0019 Adult retinal TCCTCTCTCT (6) 16.7 0.0167 Adult retinal GCAGGCTGGG (3) 9.3 0.0093 Adult retinal GTTTGCTGTG (2) 9.3 0.0093 Adult retinal AAAGCTTTTG (5) 3.7 0.0037 Adult retinal AGGGTGCTTC (2) 3.7 0.0037 Adult retinal CTTGGTTGAG (2) 3.7 0.0037 Adult retinal ACAATGTAGC (2) 1.9 0.0019 Adult retinal CTAAATATCT (2) 1.9 0.0019 Adult retinal GAGACATCCT (5) 1.9 0.0019 Adult retinal GCCTCCTCCT (6) 1.9 0.0019 ONL GTTTGCTGTG (2) 13.4 0.0134 ONL GAACTGGAAG (3) 5.7 0.0057 ONL TAGCTTGTTT (5) 5.7 0.0057 ONL TAGGTTGTTT 5.7 0.0057 ONL TCCTCTCTCT (6) 5.7 0.0057 ONL AGGGTGCTTC (2) 3.8 0.0038 ONL GCAGGGCTGG (6) 3.8 0.0038 ONL ACAATGTAGC (2) 1.9 0.0019 ONL CTTGGTTGAG (2) 1.9 0.0019 ONL GCACTGGAGG (2) 1.9 0.0019 ONL GCAGGCTGGA (3) 1.9 0.0019 ONL GCAGGCTGGG (3) 1.9 0.0019 ONL GGAGGCTGGA (3) 1.9 0.0019