Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.240627	Sox4	SRY-box containing gene 4	13	13 A3-A5 (13 20.0 cM)	20677
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	SOX4[SRY (sex determining region Y)-box 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

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SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACAGGCACGA CCATAGGACT GGGACCTCGT TCCCTGGGCA 29.4 0.0294 Cb medulloblastoma ACAGGCACGA 2.3 0.0023 P8 GC+1d culture ACAGGCACGA CCAATGCTCC CCATAGGACT GGGACCTCGT TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 22.7 0.0227 P8 GC+SHH+1d culture ACAGGCACGA CCAATGCTCC CCATAGGACT GGGACCTCGT TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 22.2 0.0222 3T3 fibroblasts ACAGGCACGA CCAATGCTCC GGGACCTCGT TCCCTGGGCA TTATCCTGTC (2) 59.5 0.0595 E15 cortex ACAGGCACGA CCAATGCTCC GAGAAACTCC (2) GGGACCTCGT TCCCTGGGCA TTTACACTTC 232.5 0.2325 P1 cortex ACAGGCACGA CCATAGGACT GGGACCTCGT TCCCTGGGCA TTATCCTGTC (2) 68.2 0.0682 E12.5 retina ACAGGCACGA CCAATGCTCC GGGACCTCGT GTGATAGCAT TCCCTGGGCA TTTACACTTC 18.9 0.0189 E14.5 retina ACAGGCACGA CCAATGCTCC GAGAAACTCC (2) GGGACCTCGT GTGATAGCAT TCCCTGGGCA TTATCCTGTC (2) 25.3 0.0253 E16.5 retina ACAGGCACGA CCAATGCTCC CCATAGGACT GGGACCTCGT TCCCTGGGCA TTATCCTGTC (2) 61.5 0.0615 E18.5 retina ACAGGCACGA CCAATGCTCC CCATAGGACT GGGACCTCGT GTCAAGAAAG GTGATAGCAT TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 45.3 0.0453 P0.5 retina ACAGGCACGA CCATAGGACT GGGACCTCGT GTGATAGCAT TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 61 0.061 P2.5 retina ACAGGCACGA CCATAGGACT GGGACCTCGT GTGATAGCAT TCCCTGGGCA TTTACACTTC 52.8 0.0528 P4.5 retina ACAGGCACGA CCAATGCTCC CCATAGGACT GAGAAACTCC (2) GGGACCTCGT GTCAAGAAAG GTGATAGCAT TCCCTGGGCA 59.5 0.0595 P6.5 retina ACAGGCACGA CCAATGCTCC CCATAGGACT GGGACCTCGT GTGATAGCAT TCCCTGGGCA TTATCCTGTC (2) TTTACACTTC 44.9 0.0449 P10.5 crx- retina ACAGGCACGA GGGACCTCGT 14.8 0.0148 P10.5 crx+ retina ACAGGCACGA CCAATGCTCC GGGACCTCGT GTGATAGCAT 11.4 0.0114 ONL GGGACCTCGT 1.9 0.0019