Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.24174	Aars	alanyl-tRNA synthetase	8		234734
Mm.24174	Exosc6	exosome component 6	8		72544
Gene Ontology	biological_process unknown | cellular_component unknown | ligase activity | tRNA ligase activity
Human Homolog	EXOSC6[exosome component 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 116 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGCAAAAAAA (21) 4.9 0.0049 P8 Cb GC TGCAATAAAA (7) 4.9 0.0049 P8 Cb GC ACATTAAAAA (4) 3.3 0.0033 P8 Cb GC AGAAACTGAA (5) 1.6 0.0016 P8 Cb GC CCTGTGCTCA (5) 1.6 0.0016 P8 Cb GC TGCTGAGATC (3) 1.6 0.0016 Cb medulloblastoma TGCAATAAAA (7) 32.4 0.0324 Cb medulloblastoma ACATTAAAAA (4) 20.8 0.0208 Cb medulloblastoma TGCAAAAAAA (21) 13.9 0.0139 Cb medulloblastoma TGCAATACTT (7) 2.3 0.0023 P8 GC+1d culture TGCAATAAAA (7) 10.3 0.0103 P8 GC+1d culture TGCAAAAAAA (21) 9.1 0.0091 P8 GC+1d culture ACATTAAAAA (4) 4.6 0.0046 P8 GC+1d culture TCTTTAATCC (30) 2.3 0.0023 P8 GC+1d culture CCTGTGCTCA (5) 1.1 0.0011 P8 GC+1d culture TGCAATACTT (7) 1.1 0.0011 P8 GC+1d culture TGCAGTAAAA (4) 1.1 0.0011 P8 GC+1d culture TGCATAACAA (3) 1.1 0.0011 P8 GC+SHH+1d culture TGCAAAAAAA (21) 15.2 0.0152 P8 GC+SHH+1d culture TGCAATAAAA (7) 12.9 0.0129 P8 GC+SHH+1d culture ACATTAAAAA (4) 4.7 0.0047 P8 GC+SHH+1d culture TCTTTAATCC (30) 4.7 0.0047 P8 GC+SHH+1d culture CTGGGCTCCT (9) 3.5 0.0035 P8 GC+SHH+1d culture CCTGTGCTCA (5) 1.2 0.0012 3T3 fibroblasts CCTGTGCTCA (5) 10.5 0.0105 3T3 fibroblasts TCTTTAATCC (30) 7 0.007 3T3 fibroblasts CTGGGCTCCT (9) 3.5 0.0035 3T3 fibroblasts GCAGACACAC (8) 3.5 0.0035 3T3 fibroblasts TGCAATAAAA (7) 3.5 0.0035 E15 cortex TCTTTAATCC (30) 4.9 0.0049 E15 cortex TGCAATAAAA (7) 4.9 0.0049 P1 cortex TGCTGAGATC (3) 13.6 0.0136 P1 cortex TCTTTAATCC (30) 9.1 0.0091 P1 cortex TGCAATAAAA (7) 9.1 0.0091 Hypothalamus TGCTGAGATC (3) 21.7 0.0217 Hypothalamus TGCAAAAAAA (21) 9.1 0.0091 Hypothalamus TGCAATAAAA (7) 5.4 0.0054 Hypothalamus ACATTAAAAA (4) 3.6 0.0036 Hypothalamus AGAAACTGAA (5) 1.8 0.0018 Hypothalamus GCAGACACAC (8) 1.8 0.0018 E12.5 retina TGCAATAAAA (7) 7.5 0.0075 E12.5 retina ACATTAAAAA (4) 3.8 0.0038 E12.5 retina CTGGGCTCCT (9) 1.9 0.0019 E12.5 retina TGCAAAAAAA (21) 1.9 0.0019 E12.5 retina TGCATAACAA (3) 1.9 0.0019 E14.5 retina TCTTTAATCC (30) 21.9 0.0219 E14.5 retina ACATTAAAAA (4) 9.1 0.0091 E14.5 retina TGCAATAAAA (7) 7.3 0.0073 E14.5 retina TGCAAAAAAA (21) 1.8 0.0018 E16.5 retina TCTTTAATCC (30) 9.1 0.0091 E16.5 retina TGCAAAAAAA (21) 5.4 0.0054 E16.5 retina TGCAATAAAA (7) 5.4 0.0054 E16.5 retina AATGGGCTCA (3) 1.8 0.0018 E16.5 retina ACATTAAAAA (4) 1.8 0.0018 E16.5 retina CCTGTGCTCA (5) 1.8 0.0018 E16.5 retina CTGGGCTCCT (9) 1.8 0.0018 E16.5 retina GCAGACACAC (8) 1.8 0.0018 E16.5 retina TGCTGAGATC (3) 1.8 0.0018 E18.5 retina TGCAATAAAA (7) 23.6 0.0236 E18.5 retina TGCAAAAAAA (21) 20 0.02 E18.5 retina ACATTAAAAA (4) 3.6 0.0036 E18.5 retina AGAAACTGAA (5) 1.8 0.0018 E18.5 retina TCTTTAATCC (30) 1.8 0.0018 E18.5 retina TGCAATACTT (7) 1.8 0.0018 E18.5 retina TGCTGAGATC (3) 1.8 0.0018 P0.5 retina TGCAATAAAA (7) 17.7 0.0177 P0.5 retina TGCAAAAAAA (21) 7.9 0.0079 P0.5 retina TGCTGAGATC (3) 5.9 0.0059 P0.5 retina CCTGTGCTCA (5) 2 0.002 P0.5 retina CTGGGCTCCT (9) 2 0.002 P0.5 retina TCTTTAATCC (30) 2 0.002 P2.5 retina TGCTGAGATC (3) 15.8 0.0158 P2.5 retina TGCAATAAAA (7) 14.1 0.0141 P2.5 retina ACATTAAAAA (4) 5.3 0.0053 P2.5 retina TGCAAAAAAA (21) 3.5 0.0035 P2.5 retina CTGGGCTCCT (9) 1.8 0.0018 P2.5 retina TCTTTAATCC (30) 1.8 0.0018 P2.5 retina TGCATAACAA (3) 1.8 0.0018 P4.5 retina TGCAATAAAA (7) 15.9 0.0159 P4.5 retina TCTTTAATCC (30) 9.9 0.0099 P4.5 retina ACATTAAAAA (4) 7.9 0.0079 P4.5 retina TGCTGAGATC (3) 7.9 0.0079 P4.5 retina TGCAAAAAAA (21) 4 0.004 P4.5 retina CCTGTGCTCA (5) 2 0.002 P4.5 retina TGCAGTAAAA (4) 2 0.002 P6.5 retina TGCTGAGATC (3) 20 0.02 P6.5 retina TGCAATAAAA (7) 18.3 0.0183 P6.5 retina ACATTAAAAA (4) 6.7 0.0067 P6.5 retina TGCAAAAAAA (21) 5 0.005 P6.5 retina TTTGGTTGAT (5) 1.7 0.0017 P10.5 crx- retina ACATTAAAAA (4) 14.9 0.0149 P10.5 crx- retina TGCAATAAAA (7) 11.1 0.0111 P10.5 crx- retina TGCTGAGATC (3) 3.7 0.0037 P10.5 crx- retina TCTTTAATCC (30) 1.9 0.0019 P10.5 crx- retina TGCAGTAAAA (4) 1.9 0.0019 P10.5 crx+ retina TGCAATAAAA (7) 19.2 0.0192 P10.5 crx+ retina TGCTGAGATC (3) 11.5 0.0115 P10.5 crx+ retina TGCAAAAAAA (21) 9.6 0.0096 P10.5 crx+ retina ACATTAAAAA (4) 3.8 0.0038 P10.5 crx+ retina TGCAGTAAAA (4) 3.8 0.0038 P10.5 crx+ retina AATGGGCTCA (3) 1.9 0.0019 P10.5 crx+ retina TCTTTAATCC (30) 1.9 0.0019 P10.5 crx+ retina TTTGGTTGAT (5) 1.9 0.0019 Adult retinal TCTTTAATCC (30) 7.4 0.0074 Adult retinal TGCAATAAAA (7) 7.4 0.0074 Adult retinal TGCAAAAAAA (21) 5.6 0.0056 Adult retinal CTGGGCTCCT (9) 1.9 0.0019 Adult retinal GCAGACACAC (8) 1.9 0.0019 Adult retinal TGCAATACTT (7) 1.9 0.0019 Adult retinal TGCTGAGATC (3) 1.9 0.0019 Adult retinal TTTGGTTGAT (5) 1.9 0.0019 ONL TCTTTAATCC (30) 13.4 0.0134 ONL TGCAAAAAAA (21) 7.7 0.0077 ONL TGCAATAAAA (7) 7.7 0.0077 ONL ACATTAAAAA (4) 3.8 0.0038 ONL AATGGGCTCA (3) 1.9 0.0019