Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2423	Col2a1	procollagen, type II, alpha 1	15	15 54.5 cM	12824
Gene Ontology	cartilage condensation | cell adhesion | collagen | collagen fibril organization | cytoplasm | extracellular matrix | extracellular matrix structural constituent | extracellular matrix structural constituent conferring tensile strength | extracellular space | extracellular space | phosphate transport | proteoglycan metabolism
Human Homolog	COL2A1[collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 54 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCCTGCTGG (4) 1.6 0.0016 Cb medulloblastoma GGACATTGGG GGTGGGATGT (2) 9.2 0.0092 P8 GC+1d culture CAAAATAAAT (2) GACATTGGAG (2) GCCCTGCTGG (4) GGTGGGATGT (2) 8 0.008 P8 GC+SHH+1d culture GCCCTGCTGG (4) GGTGGGATGT (2) GTGTAGGACA TCCAGCCCTT (2) TGAGGGGAGG 10.5 0.0105 E15 cortex AGGATTCCCC CAAAATAAAT (2) GCGGCCCGAC 14.7 0.0147 Hypothalamus GGACATTGGG 1.8 0.0018 E12.5 retina GACATTGGAG (2) GGTGGGATGT (2) GTGTAGGACA 5.7 0.0057 E14.5 retina GACATTGGAG (2) GGACATTGGG GGTGGGATGT (2) TGAGGGGAGG 18.2 0.0182 E16.5 retina AGGATTCCCC GACATTGGAG (2) GGTGGGATGT (2) GTGTAGGACA TCCAGCCCTT (2) 10.8 0.0108 E18.5 retina GACATTGGAG (2) GCGGCCCGAC GGTGGGATGT (2) TGAGGGGAGG 7.2 0.0072 P0.5 retina GACATTGGAG (2) GGACATTGGG 17.7 0.0177 P2.5 retina CAAAATAAAT (2) GACATTGGAG (2) GCCCTGCTGG (4) 19.4 0.0194 P4.5 retina GACATTGGAG (2) GCCCTGCTGG (4) GGTGGGATGT (2) GTGTAGGACA 19.8 0.0198 P6.5 retina AGGATTCCCC GACATTGGAG (2) TCCAGCCCTT (2) 6.7 0.0067 P10.5 crx- retina GCCCTGCTGG (4) GGTGGGATGT (2) 5.6 0.0056 P10.5 crx+ retina GACATTGGAG (2) GGTGGGATGT (2) TCCAGCCCTT (2) 7.6 0.0076 Adult retinal GGACATTGGG GGTGGGATGT (2) 3.8 0.0038 ONL CAAAATAAAT (2) GCCCTGCTGG (4) TCCAGCCCTT (2) 7.6 0.0076