Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.242646	Usp9x	ubiquitin specific protease 9, X chromosome	X	X 5.5 cM	22284
Gene Ontology	cysteine-type endopeptidase activity | cysteine-type peptidase activity | hydrolase activity | peptidase activity | ubiquitin thiolesterase activity | ubiquitin-dependent protein catabolism
Human Homolog	USP9X[ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 122 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTAAAAAAAA (28) 55.5 0.0555 P8 Cb GC TGGTTGCTGA (15) 3.3 0.0033 P8 Cb GC TGTTTTCTAC (3) 3.3 0.0033 P8 Cb GC GAGTGGAGAG (3) 1.6 0.0016 P8 Cb GC GGAAAACATA (2) 1.6 0.0016 P8 Cb GC TTCAAGAAGT (5) 1.6 0.0016 P8 Cb GC TTGATGCAGG (4) 1.6 0.0016 Cb medulloblastoma GTAAAAAAAA (28) 129.5 0.1295 Cb medulloblastoma TGTTTTCTAC (3) 9.2 0.0092 Cb medulloblastoma TGGTTGCTGA (15) 2.3 0.0023 Cb medulloblastoma TTCAAGAAGT (5) 2.3 0.0023 Cb medulloblastoma TTGATGCAGG (4) 2.3 0.0023 P8 GC+1d culture GTAAAAAAAA (28) 74.2 0.0742 P8 GC+1d culture TGTTTTCTAC (3) 10.3 0.0103 P8 GC+1d culture TTTGACAGTG (4) 3.4 0.0034 P8 GC+1d culture TTCAGCATCG (2) 2.3 0.0023 P8 GC+1d culture GAGTGGAGAG (3) 1.1 0.0011 P8 GC+SHH+1d culture GTAAAAAAAA (28) 132.3 0.1323 P8 GC+SHH+1d culture TGTTTTCTAC (3) 10.5 0.0105 P8 GC+SHH+1d culture GAGTGGAGAG (3) 3.5 0.0035 P8 GC+SHH+1d culture TTCAAGAAGT (5) 3.5 0.0035 P8 GC+SHH+1d culture TGGTTGCTGA (15) 2.3 0.0023 P8 GC+SHH+1d culture TTCAGCATCG (2) 2.3 0.0023 P8 GC+SHH+1d culture TTTGACAGTG (4) 2.3 0.0023 P8 GC+SHH+1d culture GGAAAACATA (2) 1.2 0.0012 3T3 fibroblasts GAGTGGAGAG (3) 7 0.007 3T3 fibroblasts GTAAAAAAAA (28) 7 0.007 3T3 fibroblasts TGGTTGCTGA (15) 7 0.007 3T3 fibroblasts TTCAGCATCG (2) 3.5 0.0035 3T3 fibroblasts TTGATGCAGG (4) 3.5 0.0035 E15 cortex GTAAAAAAAA (28) 34.6 0.0346 E15 cortex TGGTTGCTGA (15) 4.9 0.0049 P1 cortex GTAAAAAAAA (28) 36.4 0.0364 P1 cortex TTTGACAGTG (4) 9.1 0.0091 P1 cortex CAAGCAATTC (3) 4.5 0.0045 P1 cortex TCACACCAAT 4.5 0.0045 P1 cortex TGTTTTCTAC (3) 4.5 0.0045 Hypothalamus GTAAAAAAAA (28) 99.6 0.0996 Hypothalamus TGTTTTCTAC (3) 18.1 0.0181 Hypothalamus TTCAGCATCG (2) 5.4 0.0054 Hypothalamus GAGTGGAGAG (3) 1.8 0.0018 Hypothalamus TGGTTGCTGA (15) 1.8 0.0018 Hypothalamus TTTGACAGTG (4) 1.8 0.0018 E12.5 retina GTAAAAAAAA (28) 41.3 0.0413 E12.5 retina AAGACTCACA (6) 1.9 0.0019 E12.5 retina CAAGCAATTC (3) 1.9 0.0019 E12.5 retina GAGTGGAGAG (3) 1.9 0.0019 E12.5 retina GGAAAACATA (2) 1.9 0.0019 E12.5 retina TGGTTGCTGA (15) 1.9 0.0019 E12.5 retina TGTTTTCTAC (3) 1.9 0.0019 E12.5 retina TTTGACAGTG (4) 1.9 0.0019 E14.5 retina GTAAAAAAAA (28) 82 0.082 E14.5 retina TGGTTGCTGA (15) 21.9 0.0219 E14.5 retina AAGACTCACA (6) 1.8 0.0018 E14.5 retina CAAGCAATTC (3) 1.8 0.0018 E14.5 retina TTTGACAGTG (4) 1.8 0.0018 E16.5 retina GTAAAAAAAA (28) 68.8 0.0688 E16.5 retina TGGTTGCTGA (15) 19.9 0.0199 E16.5 retina TGTTTTCTAC (3) 7.2 0.0072 E16.5 retina GAGTGGAGAG (3) 3.6 0.0036 E16.5 retina TTCAGCATCG (2) 1.8 0.0018 E16.5 retina TTGATGCAGG (4) 1.8 0.0018 E16.5 retina TTTGACAGTG (4) 1.8 0.0018 E18.5 retina GTAAAAAAAA (28) 189.2 0.1892 E18.5 retina TGTTTTCTAC (3) 3.6 0.0036 E18.5 retina TTCAGCATCG (2) 3.6 0.0036 E18.5 retina TGGTTGCTGA (15) 1.8 0.0018 P0.5 retina GTAAAAAAAA (28) 51 0.051 P0.5 retina TTTGACAGTG (4) 5.9 0.0059 P0.5 retina GAGTGGAGAG (3) 3.9 0.0039 P0.5 retina AAGACTCACA (6) 2 0.002 P0.5 retina CAAGCAATTC (3) 2 0.002 P0.5 retina TGGTTGCTGA (15) 2 0.002 P0.5 retina TGTTTTCTAC (3) 2 0.002 P2.5 retina GTAAAAAAAA (28) 103.8 0.1038 P2.5 retina TTCAAGAAGT (5) 14.1 0.0141 P2.5 retina AGTGTTGCAT 1.8 0.0018 P2.5 retina TGGTTGCTGA (15) 1.8 0.0018 P4.5 retina GTAAAAAAAA (28) 142.7 0.1427 P4.5 retina TGGTTGCTGA (15) 5.9 0.0059 P4.5 retina TGTTTTCTAC (3) 4 0.004 P4.5 retina TTCAAGAAGT (5) 4 0.004 P4.5 retina AAGACTCACA (6) 2 0.002 P4.5 retina GAGTGGAGAG (3) 2 0.002 P4.5 retina TTCAGCATCG (2) 2 0.002 P6.5 retina GTAAAAAAAA (28) 66.7 0.0667 P6.5 retina TGGTTGCTGA (15) 8.3 0.0083 P6.5 retina CAAGCAATTC (3) 1.7 0.0017 P6.5 retina GAGTGGAGAG (3) 1.7 0.0017 P6.5 retina TTCAAGAAGT (5) 1.7 0.0017 P6.5 retina TTTGACAGTG (4) 1.7 0.0017 P10.5 crx- retina GTAAAAAAAA (28) 26 0.026 P10.5 crx- retina TGTTTTCTAC (3) 14.9 0.0149 P10.5 crx- retina AGTGTTGCAT 3.7 0.0037 P10.5 crx- retina GAGTGGAGAG (3) 3.7 0.0037 P10.5 crx- retina TTCAGCATCG (2) 3.7 0.0037 P10.5 crx- retina CAAGCAATTC (3) 1.9 0.0019 P10.5 crx- retina TCACACCAAT 1.9 0.0019 P10.5 crx- retina TGGTTGCTGA (15) 1.9 0.0019 P10.5 crx- retina TTTGACAGTG (4) 1.9 0.0019 P10.5 crx+ retina GTAAAAAAAA (28) 55.8 0.0558 P10.5 crx+ retina TGTTTTCTAC (3) 7.7 0.0077 P10.5 crx+ retina AAGACTCACA (6) 3.8 0.0038 P10.5 crx+ retina TGGTTGCTGA (15) 3.8 0.0038 P10.5 crx+ retina TTTGACAGTG (4) 3.8 0.0038 P10.5 crx+ retina TTCAGCATCG (2) 1.9 0.0019 Adult retinal GTAAAAAAAA (28) 22.2 0.0222 Adult retinal TGTTTTCTAC (3) 9.3 0.0093 Adult retinal AAAATAGAAA (3) 1.9 0.0019 Adult retinal AAGACTCACA (6) 1.9 0.0019 Adult retinal AGTGTTGCAT 1.9 0.0019 Adult retinal TGGTTGCTGA (15) 1.9 0.0019 Adult retinal TTTGACAGTG (4) 1.9 0.0019 ONL GTAAAAAAAA (28) 24.9 0.0249 ONL TGGTTGCTGA (15) 11.5 0.0115 ONL TGTTTTCTAC (3) 11.5 0.0115 ONL AAAATAGAAA (3) 3.8 0.0038 ONL AAGACTCACA (6) 3.8 0.0038 ONL TTTGACAGTG (4) 3.8 0.0038 ONL CAAGCAATTC (3) 1.9 0.0019 ONL TCACACCAAT 1.9 0.0019 ONL TTCAAGAAGT (5) 1.9 0.0019