Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.246952	Xrcc5	X-ray repair complementing defective repair in Chinese hamster cells 5	1	1 42.0 cM	22596
Gene Ontology	ATP dependent DNA helicase activity | cytoplasm | DNA binding | DNA recombination | DNA repair | DNA-dependent protein kinase complex | double-strand break repair via nonhomologous end-joining | helicase activity | nucleus
Human Homolog	XRCC5[X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kDa)] | XRCC5[X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kDa)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 28 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATGTGTGGG (2) 6.5 0.0065 P8 Cb GC GGAAACAAAA (11) 1.6 0.0016 Cb medulloblastoma GATGTGTGGG (2) 2.3 0.0023 Cb medulloblastoma GGAAACAAAA (11) 2.3 0.0023 Cb medulloblastoma TATGTGTGGG (5) 2.3 0.0023 P8 GC+1d culture GATGTGTGGG (2) 3.4 0.0034 P8 GC+1d culture CCCTGGCCTT (6) 1.1 0.0011 P8 GC+1d culture TGCAGTAAAT (8) 1.1 0.0011 P8 GC+SHH+1d culture GATGTGTGGG (2) 5.9 0.0059 P8 GC+SHH+1d culture TGCAGTAAAT (8) 1.2 0.0012 3T3 fibroblasts CCCTGGCCTT (6) 7 0.007 P1 cortex GGAAACAAAA (11) 4.5 0.0045 Hypothalamus TGCAGTAAAT (8) 1.8 0.0018 E12.5 retina GATGTGTGGG (2) 1.9 0.0019 E16.5 retina GATGTGTGGG (2) 5.4 0.0054 E16.5 retina GGAAACAAAA (11) 1.8 0.0018 E16.5 retina TGCAGTAAAT (8) 1.8 0.0018 E18.5 retina GGAAACAAAA (11) 3.6 0.0036 E18.5 retina TTAAGTAAAT 1.8 0.0018 P0.5 retina GATGTGTGGG (2) 2 0.002 P2.5 retina TGCAGTAAAT (8) 3.5 0.0035 P4.5 retina GATGTGTGGG (2) 2 0.002 P6.5 retina GATGTGTGGG (2) 3.3 0.0033 P10.5 crx- retina GATGTGTGGG (2) 5.6 0.0056 P10.5 crx- retina TATGTGTGGG (5) 1.9 0.0019 ONL TTAAGTAAAT 3.8 0.0038 ONL GATGTGTGGG (2) 1.9 0.0019 ONL TATGTGTGGG (5) 1.9 0.0019