Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.247788	Cct2	chaperonin subunit 2 (beta)	10		12461
Gene Ontology	ATP binding | protein amino acid phosphorylation | protein folding | protein kinase activity
Human Homolog	CCT2[chaperonin containing TCP1, subunit 2 (beta)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 162 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGTCTAATTT (2) 27.7 0.0277 P8 Cb GC CGGATTCGCA (2) 17.9 0.0179 P8 Cb GC TCCATCAAGA (3) 9.8 0.0098 P8 Cb GC GAACATTGCA (5) 6.5 0.0065 P8 Cb GC GCTTCCCTTT (7) 3.3 0.0033 P8 Cb GC GGAAGTGGGC (3) 3.3 0.0033 P8 Cb GC CTGTGACACA (3) 1.6 0.0016 P8 Cb GC GTTCTGACTG (7) 1.6 0.0016 P8 Cb GC TCTTCAAAAA (7) 1.6 0.0016 P8 Cb GC TTCTATCTCT 1.6 0.0016 Cb medulloblastoma CGGATTCGCA (2) 16.2 0.0162 Cb medulloblastoma GGTCTAATTT (2) 9.2 0.0092 Cb medulloblastoma TCCATCAAGA (3) 9.2 0.0092 Cb medulloblastoma GAACATTGCA (5) 6.9 0.0069 Cb medulloblastoma GGAAGTGGGC (3) 6.9 0.0069 Cb medulloblastoma CACCCAAAAA (3) 2.3 0.0023 Cb medulloblastoma GCTTCCCTTT (7) 2.3 0.0023 P8 GC+1d culture GGTCTAATTT (2) 32 0.032 P8 GC+1d culture TCCATCAAGA (3) 22.8 0.0228 P8 GC+1d culture CGGATTCGCA (2) 21.7 0.0217 P8 GC+1d culture GAACATTGCA (5) 10.3 0.0103 P8 GC+1d culture GGAAGTGGGC (3) 8 0.008 P8 GC+1d culture GCTTCCCTTT (7) 3.4 0.0034 P8 GC+1d culture GTTCTGACTG (7) 2.3 0.0023 P8 GC+1d culture ATGCTCTTTG (2) 1.1 0.0011 P8 GC+SHH+1d culture GGTCTAATTT (2) 32.8 0.0328 P8 GC+SHH+1d culture TCCATCAAGA (3) 17.6 0.0176 P8 GC+SHH+1d culture CGGATTCGCA (2) 16.4 0.0164 P8 GC+SHH+1d culture GGAAGTGGGC (3) 7 0.007 P8 GC+SHH+1d culture CAGAAAAAGG (2) 3.5 0.0035 P8 GC+SHH+1d culture GTTCTGACTG (7) 3.5 0.0035 P8 GC+SHH+1d culture GAACATTGCA (5) 2.3 0.0023 P8 GC+SHH+1d culture ATGCTCTTTG (2) 1.2 0.0012 P8 GC+SHH+1d culture CTGTGACACA (3) 1.2 0.0012 P8 GC+SHH+1d culture GGGGGGGTAA (3) 1.2 0.0012 P8 GC+SHH+1d culture TCTTCAAAAA (7) 1.2 0.0012 P8 GC+SHH+1d culture TTCTATCTCT 1.2 0.0012 3T3 fibroblasts GAACATTGCA (5) 217.3 0.2173 3T3 fibroblasts TCCATCAAGA (3) 10.5 0.0105 3T3 fibroblasts GGAAGTGGGC (3) 7 0.007 E15 cortex GGAAGTGGGC (3) 14.8 0.0148 E15 cortex GGTCTAATTT (2) 14.8 0.0148 E15 cortex CGGATTCGCA (2) 9.9 0.0099 E15 cortex TCCATCAAGA (3) 4.9 0.0049 P1 cortex GAACATTGCA (5) 18.2 0.0182 P1 cortex CGGATTCGCA (2) 13.6 0.0136 P1 cortex AAAATAATTT (7) 4.5 0.0045 P1 cortex GGTCTAATTT (2) 4.5 0.0045 P1 cortex TCCATCAAGA (3) 4.5 0.0045 Hypothalamus TCCATCAAGA (3) 21.7 0.0217 Hypothalamus CGGATTCGCA (2) 14.5 0.0145 Hypothalamus GAACATTGCA (5) 14.5 0.0145 Hypothalamus GGTCTAATTT (2) 14.5 0.0145 Hypothalamus GGAAGTGGGC (3) 5.4 0.0054 Hypothalamus AAAATAATTT (7) 3.6 0.0036 Hypothalamus CACAGACCAT (3) 1.8 0.0018 Hypothalamus CACCCAAAAA (3) 1.8 0.0018 Hypothalamus CAGAAAAAGG (2) 1.8 0.0018 Hypothalamus GTTCTGACTG (7) 1.8 0.0018 E12.5 retina TCCATCAAGA (3) 35.7 0.0357 E12.5 retina GGTCTAATTT (2) 22.5 0.0225 E12.5 retina GGAAGTGGGC (3) 13.1 0.0131 E12.5 retina GCTTCCCTTT (7) 5.6 0.0056 E12.5 retina CGGATTCGCA (2) 3.8 0.0038 E12.5 retina GAACATTGCA (5) 3.8 0.0038 E14.5 retina GGTCTAATTT (2) 32.8 0.0328 E14.5 retina TCCATCAAGA (3) 21.9 0.0219 E14.5 retina GGAAGTGGGC (3) 7.3 0.0073 E14.5 retina GAACATTGCA (5) 3.6 0.0036 E14.5 retina GTTCTGACTG (7) 3.6 0.0036 E14.5 retina AAAATAATTT (7) 1.8 0.0018 E14.5 retina GGTTTAATTT (3) 1.8 0.0018 E14.5 retina TTCTATCTCT 1.8 0.0018 E16.5 retina GGTCTAATTT (2) 19.9 0.0199 E16.5 retina TCCATCAAGA (3) 18.1 0.0181 E16.5 retina CGGATTCGCA (2) 12.7 0.0127 E16.5 retina GGAAGTGGGC (3) 7.2 0.0072 E16.5 retina TCCCTCCAAG (3) 3.6 0.0036 E16.5 retina CTGTGACACA (3) 1.8 0.0018 E16.5 retina GAACATTGCA (5) 1.8 0.0018 E18.5 retina GGTCTAATTT (2) 27.3 0.0273 E18.5 retina GGAAGTGGGC (3) 7.3 0.0073 E18.5 retina TCCATCAAGA (3) 5.5 0.0055 E18.5 retina TCCCTCCAAG (3) 3.6 0.0036 E18.5 retina AAAATAATTT (7) 1.8 0.0018 E18.5 retina CGGATTCGCA (2) 1.8 0.0018 E18.5 retina GAAAAATTCT (5) 1.8 0.0018 E18.5 retina GCTTCCCTTT (7) 1.8 0.0018 P0.5 retina CGGATTCGCA (2) 11.8 0.0118 P0.5 retina GGTCTAATTT (2) 11.8 0.0118 P0.5 retina TCCATCAAGA (3) 5.9 0.0059 P0.5 retina GAACATTGCA (5) 3.9 0.0039 P0.5 retina GGAAGTGGGC (3) 3.9 0.0039 P0.5 retina TCCCTCCAAG (3) 3.9 0.0039 P0.5 retina CACAGACCAT (3) 2 0.002 P0.5 retina GCTTCCCTTT (7) 2 0.002 P0.5 retina GGTTTAATTT (3) 2 0.002 P2.5 retina CGGATTCGCA (2) 22.9 0.0229 P2.5 retina TCCATCAAGA (3) 21.1 0.0211 P2.5 retina GGTCTAATTT (2) 10.6 0.0106 P2.5 retina GGAAGTGGGC (3) 7 0.007 P2.5 retina GAATAAATTG (3) 3.5 0.0035 P2.5 retina GAACATTGCA (5) 1.8 0.0018 P2.5 retina GCTTCCCTTT (7) 1.8 0.0018 P2.5 retina GGTGTGGACA (4) 1.8 0.0018 P2.5 retina TCCCTCCAAG (3) 1.8 0.0018 P4.5 retina TCCATCAAGA (3) 21.8 0.0218 P4.5 retina CGGATTCGCA (2) 15.9 0.0159 P4.5 retina GGTCTAATTT (2) 15.9 0.0159 P4.5 retina GGAAGTGGGC (3) 7.9 0.0079 P4.5 retina GAACATTGCA (5) 5.9 0.0059 P4.5 retina TCCCTCCAAG (3) 5.9 0.0059 P4.5 retina GCTTCCCTTT (7) 4 0.004 P4.5 retina CACCCAAAAA (3) 2 0.002 P4.5 retina GAATAAATTG (3) 2 0.002 P4.5 retina GGTTTAATTT (3) 2 0.002 P6.5 retina CGGATTCGCA (2) 36.7 0.0367 P6.5 retina TCCATCAAGA (3) 26.7 0.0267 P6.5 retina GGTCTAATTT (2) 18.3 0.0183 P6.5 retina GAACATTGCA (5) 11.7 0.0117 P6.5 retina GGAAGTGGGC (3) 11.7 0.0117 P6.5 retina GGTGTGGACA (4) 5 0.005 P6.5 retina CACAGACCAT (3) 1.7 0.0017 P6.5 retina GCTTCCCTTT (7) 1.7 0.0017 P6.5 retina GGTTTAATTT (3) 1.7 0.0017 P6.5 retina GTTCTGACTG (7) 1.7 0.0017 P6.5 retina TTCTATCTCT 1.7 0.0017 P10.5 crx- retina CGGATTCGCA (2) 35.3 0.0353 P10.5 crx- retina GGTCTAATTT (2) 31.6 0.0316 P10.5 crx- retina TCCATCAAGA (3) 11.1 0.0111 P10.5 crx- retina GAACATTGCA (5) 7.4 0.0074 P10.5 crx- retina TCCCTCCAAG (3) 3.7 0.0037 P10.5 crx- retina AAAATAATTT (7) 1.9 0.0019 P10.5 crx- retina GCTTCCCTTT (7) 1.9 0.0019 P10.5 crx- retina GGAAGTGGGC (3) 1.9 0.0019 P10.5 crx- retina GGTTTAATTT (3) 1.9 0.0019 P10.5 crx- retina GTTCTGACTG (7) 1.9 0.0019 P10.5 crx+ retina CGGATTCGCA (2) 15.4 0.0154 P10.5 crx+ retina TCCATCAAGA (3) 15.4 0.0154 P10.5 crx+ retina GGAAGTGGGC (3) 11.5 0.0115 P10.5 crx+ retina GAACATTGCA (5) 5.8 0.0058 P10.5 crx+ retina GGTCTAATTT (2) 5.8 0.0058 P10.5 crx+ retina GCTTCCCTTT (7) 3.8 0.0038 P10.5 crx+ retina TCCCTCCAAG (3) 3.8 0.0038 P10.5 crx+ retina GGTGTGGACA (4) 1.9 0.0019 Adult retinal TCCATCAAGA (3) 16.7 0.0167 Adult retinal GAACATTGCA (5) 5.6 0.0056 Adult retinal CGGATTCGCA (2) 3.7 0.0037 Adult retinal GGAAGTGGGC (3) 3.7 0.0037 Adult retinal GGGGGGGTAA (3) 3.7 0.0037 Adult retinal GGTCTAATTT (2) 3.7 0.0037 Adult retinal GCTTCCCTTT (7) 1.9 0.0019 Adult retinal GGTGTGGACA (4) 1.9 0.0019 ONL CGGATTCGCA (2) 9.6 0.0096 ONL TCCATCAAGA (3) 9.6 0.0096 ONL GCTTCCCTTT (7) 5.7 0.0057 ONL GAAAAATTCT (5) 3.8 0.0038 ONL TCTTCAAAAA (7) 3.8 0.0038 ONL GAACATTGCA (5) 1.9 0.0019 ONL GGTCTAATTT (2) 1.9 0.0019 ONL GGTGTGGACA (4) 1.9 0.0019 ONL GGTTTAATTT (3) 1.9 0.0019