Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.248517	Taf6	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	5		21343
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor TFIID complex | transcription initiation | transcription initiation factor activity
Human Homolog	TAF6[TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 50 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGTACATTC (2) 4.9 0.0049 P8 Cb GC TGCTGACCTC (2) 3.3 0.0033 Cb medulloblastoma GTGTACATTC (2) 4.6 0.0046 P8 GC+1d culture GTGTACATTC (2) 4.6 0.0046 P8 GC+1d culture TGCTGACCTC (2) 3.4 0.0034 P8 GC+1d culture GGTAGAGGTG (3) 2.3 0.0023 P8 GC+1d culture CTCCGGTCTC (3) 1.1 0.0011 P8 GC+1d culture GGAACAGAGA (5) 1.1 0.0011 P8 GC+1d culture TGCTGACTCC 1.1 0.0011 P8 GC+SHH+1d culture GTGTACATTC (2) 2.3 0.0023 P8 GC+SHH+1d culture TGCTGACCTC (2) 2.3 0.0023 3T3 fibroblasts TGCTGACCTC (2) 7 0.007 3T3 fibroblasts GGTAGAGGTG (3) 3.5 0.0035 E15 cortex GTGTACATTC (2) 4.9 0.0049 E15 cortex TGCTGACCTC (2) 4.9 0.0049 Hypothalamus TGCTGACCTC (2) 1.8 0.0018 Hypothalamus TGCTGACTCC 1.8 0.0018 E12.5 retina CTCCGGTCTC (3) 1.9 0.0019 E12.5 retina GTGTACATTC (2) 1.9 0.0019 E12.5 retina TGCTGACCTC (2) 1.9 0.0019 E14.5 retina TGCTGACCTC (2) 5.5 0.0055 E14.5 retina GGAACAGAGA (5) 1.8 0.0018 E14.5 retina GGTAGAGGTG (3) 1.8 0.0018 E14.5 retina GTGTACATTC (2) 1.8 0.0018 E16.5 retina TGCTGACCTC (2) 9.1 0.0091 E16.5 retina GTGTACATTC (2) 1.8 0.0018 E16.5 retina TACACAACAG (2) 1.8 0.0018 E18.5 retina GTGTACATTC (2) 5.5 0.0055 E18.5 retina TGCTGACCTC (2) 5.5 0.0055 P0.5 retina TGCTGACCTC (2) 9.8 0.0098 P0.5 retina GGAACAGAGA (5) 2 0.002 P0.5 retina GTGTACATTC (2) 2 0.002 P2.5 retina GTGTACATTC (2) 7 0.007 P2.5 retina TGCTGACCTC (2) 3.5 0.0035 P4.5 retina GTGTACATTC (2) 5.9 0.0059 P4.5 retina TGCTGACCTC (2) 4 0.004 P4.5 retina CATTTGTACA (7) 2 0.002 P6.5 retina TGCTGACCTC (2) 6.7 0.0067 P6.5 retina CATTTGTACA (7) 3.3 0.0033 P6.5 retina GGAACAGAGA (5) 1.7 0.0017 P10.5 crx- retina TGCTGACCTC (2) 7.4 0.0074 P10.5 crx- retina GTGTACATTC (2) 5.6 0.0056 P10.5 crx- retina CTCCGGTCTC (3) 3.7 0.0037 P10.5 crx- retina TACACAACAG (2) 3.7 0.0037 P10.5 crx+ retina TGCTGACCTC (2) 13.5 0.0135 P10.5 crx+ retina GGTAGAGGTG (3) 1.9 0.0019 Adult retinal TGCTGACCTC (2) 5.6 0.0056 ONL TGCTGACTCC 3.8 0.0038 ONL GTGTACATTC (2) 1.9 0.0019 ONL TGCTGACCTC (2) 1.9 0.0019