Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.249934	Stat3	signal transducer and activator of transcription 3	11	11 60.5 cM	20848
Gene Ontology	acute-phase response | cytoplasm | cytoplasm | DNA binding | eye photoreceptor cell differentiation | intracellular signaling cascade | JAK-STAT cascade | nucleus | nucleus | plasma membrane | protein binding | protein dimerization activity | regulation of transcription from Pol II promoter | regulation of transcription, DNA-dependent | signal transducer activity | signal transduction | transcription factor activity | transcription from Pol II promoter | transcriptional activator activity
Human Homolog	STAT3[signal transducer and activator of transcription 3 (acute-phase response factor)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 44 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCATCCTGTT (2) 21.2 0.0212 P8 Cb GC GGCACCAGGA (2) 1.6 0.0016 P8 Cb GC TGAGGAGCTG (2) 1.6 0.0016 Cb medulloblastoma GCATCCTGTT (2) 48.6 0.0486 Cb medulloblastoma GGCACCAGGA (2) 2.3 0.0023 P8 GC+1d culture GCATCCTGTT (2) 22.8 0.0228 P8 GC+1d culture GCTAGATTCA 4.6 0.0046 P8 GC+1d culture GGCACCAGGA (2) 2.3 0.0023 P8 GC+1d culture TGAGGAGCTG (2) 1.1 0.0011 P8 GC+SHH+1d culture GCATCCTGTT (2) 28.1 0.0281 P8 GC+SHH+1d culture GCTAGATTCA 2.3 0.0023 P8 GC+SHH+1d culture GGCACCAGGA (2) 1.2 0.0012 3T3 fibroblasts GCTAGATTCA 10.5 0.0105 3T3 fibroblasts GCATCCTGTT (2) 7 0.007 E15 cortex GCATCCTGTT (2) 19.8 0.0198 E15 cortex GGGCAGGAGG 4.9 0.0049 P1 cortex GCATCCTGTT (2) 31.8 0.0318 Hypothalamus GCATCCTGTT (2) 25.4 0.0254 Hypothalamus TGAGGAGCTG (2) 1.8 0.0018 E12.5 retina GCATCCTGTT (2) 16.9 0.0169 E14.5 retina GCATCCTGTT (2) 9.1 0.0091 E16.5 retina GCATCCTGTT (2) 7.2 0.0072 E18.5 retina GCATCCTGTT (2) 43.7 0.0437 E18.5 retina TGAGGAGCTG (2) 1.8 0.0018 P0.5 retina GCATCCTGTT (2) 7.9 0.0079 P0.5 retina GCTAGATTCA 2 0.002 P2.5 retina GCATCCTGTT (2) 19.4 0.0194 P2.5 retina GGCACCAGGA (2) 1.8 0.0018 P2.5 retina TGAGGAGCTG (2) 1.8 0.0018 P4.5 retina GCATCCTGTT (2) 27.7 0.0277 P4.5 retina GGCACCAGGA (2) 2 0.002 P6.5 retina GCATCCTGTT (2) 21.7 0.0217 P10.5 crx- retina GCATCCTGTT (2) 7.4 0.0074 P10.5 crx- retina GGCACCAGGA (2) 1.9 0.0019 P10.5 crx- retina TGAGGAGCTG (2) 1.9 0.0019 P10.5 crx+ retina GCATCCTGTT (2) 26.9 0.0269 P10.5 crx+ retina GGCACCAGGA (2) 1.9 0.0019 P10.5 crx+ retina TGAGGAGCTG (2) 1.9 0.0019 Adult retinal GCATCCTGTT (2) 20.4 0.0204 Adult retinal TGAGGAGCTG (2) 3.7 0.0037 Adult retinal GCTAGATTCA 1.9 0.0019 ONL GCATCCTGTT (2) 19.2 0.0192 ONL GGCACCAGGA (2) 5.7 0.0057 ONL GGGCAGGAGG 1.9 0.0019