Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.256875
2900006B13Rik
RIKEN cDNA 2900006B13 gene
11
72947
Mm.256875
3010025C11Rik
RIKEN cDNA 3010025C11 gene
11
77086
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 139 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGTTGCTGG (
369
)
68.5
0.0685
P8 Cb GC
TCAGTAAAAA (
4
)
6.5
0.0065
P8 Cb GC
TGCATCTTAT (
3
)
4.9
0.0049
P8 Cb GC
TCTGTAACAT (
5
)
3.3
0.0033
P8 Cb GC
CCTTTAATTC (
36
)
1.6
0.0016
P8 Cb GC
CCTTTAGTCC (
27
)
1.6
0.0016
P8 Cb GC
TCTGGAAAAT
(
4
)
1.6
0.0016
P8 Cb GC
TCTGTTTGTT (
4
)
1.6
0.0016
P8 Cb GC
TTTTAAAGAC
(
3
)
1.6
0.0016
Cb medulloblastoma
TGGTTGCTGG (
369
)
113.3
0.1133
Cb medulloblastoma
TCAGTAAAAA (
4
)
6.9
0.0069
Cb medulloblastoma
CCTTTAATTC (
36
)
4.6
0.0046
Cb medulloblastoma
TGCATCTTAT (
3
)
4.6
0.0046
P8 GC+1d culture
TGGTTGCTGG (
369
)
57.1
0.0571
P8 GC+1d culture
TGCATCTTAT (
3
)
12.6
0.0126
P8 GC+1d culture
CCTTTAGTCC (
27
)
10.3
0.0103
P8 GC+1d culture
TCTGGAAAAT
(
4
)
5.7
0.0057
P8 GC+1d culture
TCAGTAAAAA (
4
)
2.3
0.0023
P8 GC+1d culture
TGCTGTACTA (
2
)
2.3
0.0023
P8 GC+1d culture
AAGGCATCTT (
3
)
1.1
0.0011
P8 GC+1d culture
GCAAGATGGT
(
2
)
1.1
0.0011
P8 GC+1d culture
TCTGTAACAT (
5
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGTTGCTGG (
369
)
89
0.089
P8 GC+SHH+1d culture
TGCATCTTAT (
3
)
16.4
0.0164
P8 GC+SHH+1d culture
CCTTTAATTC (
36
)
7
0.007
P8 GC+SHH+1d culture
TCAGTAAAAA (
4
)
7
0.007
P8 GC+SHH+1d culture
AAGGCATCTT (
3
)
4.7
0.0047
P8 GC+SHH+1d culture
CCTTTAGTCC (
27
)
3.5
0.0035
P8 GC+SHH+1d culture
TCTGGAAAAT
(
4
)
2.3
0.0023
P8 GC+SHH+1d culture
TTTTAAAGAC
(
3
)
1.2
0.0012
3T3 fibroblasts
TGGTTGCTGG (
369
)
220.8
0.2208
3T3 fibroblasts
CCTTTAATTC (
36
)
7
0.007
3T3 fibroblasts
CCTTTAGTCT (
7
)
3.5
0.0035
E15 cortex
TGGTTGCTGG (
369
)
277.1
0.2771
E15 cortex
CCTTTAGTCC (
27
)
9.9
0.0099
E15 cortex
CCTTTAGTCT (
7
)
4.9
0.0049
E15 cortex
TCTGGAAAAT
(
4
)
4.9
0.0049
P1 cortex
TGGTTGCTGG (
369
)
86.4
0.0864
P1 cortex
CCTTTAGTCC (
27
)
27.3
0.0273
P1 cortex
CCTTTAATTC (
36
)
13.6
0.0136
P1 cortex
TCAGTAAAAA (
4
)
4.5
0.0045
P1 cortex
TCTGGAAAAT
(
4
)
4.5
0.0045
P1 cortex
TGCATCTTAT (
3
)
4.5
0.0045
Hypothalamus
TGGTTGCTGG (
369
)
349.6
0.3496
Hypothalamus
CCTTTAGTCC (
27
)
3.6
0.0036
Hypothalamus
CAAGCCCAAT
(
2
)
1.8
0.0018
Hypothalamus
CCTTTAGTCT (
7
)
1.8
0.0018
Hypothalamus
CTGGGCTACT (
4
)
1.8
0.0018
E12.5 retina
TGGTTGCTGG (
369
)
157.7
0.1577
E12.5 retina
TGCATCTTAT (
3
)
7.5
0.0075
E12.5 retina
CCTTTAGTCC (
27
)
5.6
0.0056
E12.5 retina
CCTTTAATTC (
36
)
3.8
0.0038
E12.5 retina
TCAGTAAAAA (
4
)
3.8
0.0038
E12.5 retina
CAAGCCCAAT
(
2
)
1.9
0.0019
E12.5 retina
GCAAGATGGT
(
2
)
1.9
0.0019
E12.5 retina
TGCTGTACTA (
2
)
1.9
0.0019
E12.5 retina
TTTTAAAGAC
(
3
)
1.9
0.0019
E14.5 retina
TGGTTGCTGG (
369
)
936.5
0.9365
E14.5 retina
CCTTTAGTCC (
27
)
14.6
0.0146
E14.5 retina
TCAGTAAAAA (
4
)
10.9
0.0109
E14.5 retina
TGCATCTTAT (
3
)
9.1
0.0091
E14.5 retina
CCTTTAATTC (
36
)
7.3
0.0073
E14.5 retina
AAGGCATCTT (
3
)
1.8
0.0018
E14.5 retina
CCTTTAGTCT (
7
)
1.8
0.0018
E14.5 retina
GAAGAAAAAG (
22
)
1.8
0.0018
E14.5 retina
GCAAGATGGT
(
2
)
1.8
0.0018
E16.5 retina
TGGTTGCTGG (
369
)
767.9
0.7679
E16.5 retina
TGCATCTTAT (
3
)
9.1
0.0091
E16.5 retina
TCAGTAAAAA (
4
)
7.2
0.0072
E16.5 retina
AAGGCATCTT (
3
)
5.4
0.0054
E16.5 retina
CCTTTAGTCC (
27
)
5.4
0.0054
E16.5 retina
CCTTTAATTC (
36
)
3.6
0.0036
E16.5 retina
TCTGTTTGTT (
4
)
1.8
0.0018
E18.5 retina
TGGTTGCTGG (
369
)
252.8
0.2528
E18.5 retina
CCTTTAGTCC (
27
)
5.5
0.0055
E18.5 retina
TCAGTAAAAA (
4
)
5.5
0.0055
E18.5 retina
TGCATCTTAT (
3
)
5.5
0.0055
E18.5 retina
CCTTTAATTC (
36
)
1.8
0.0018
E18.5 retina
GCAAGATGGT
(
2
)
1.8
0.0018
P0.5 retina
TGGTTGCTGG (
369
)
190.4
0.1904
P0.5 retina
TGCATCTTAT (
3
)
11.8
0.0118
P0.5 retina
CCTTTAGTCC (
27
)
7.9
0.0079
P0.5 retina
CCTTTAATTC (
36
)
5.9
0.0059
P0.5 retina
CCTTTAGTCT (
7
)
5.9
0.0059
P0.5 retina
TCTGGAAAAT
(
4
)
3.9
0.0039
P0.5 retina
GCAAGATGGT
(
2
)
2
0.002
P2.5 retina
TGGTTGCTGG (
369
)
165.4
0.1654
P2.5 retina
TGCATCTTAT (
3
)
10.6
0.0106
P2.5 retina
CCTTTAGTCC (
27
)
5.3
0.0053
P2.5 retina
TCAGTAAAAA (
4
)
5.3
0.0053
P2.5 retina
TCTGGAAAAT
(
4
)
5.3
0.0053
P2.5 retina
AAGGCATCTT (
3
)
1.8
0.0018
P2.5 retina
CAAGCCCAAT
(
2
)
1.8
0.0018
P2.5 retina
CCTTTAATTC (
36
)
1.8
0.0018
P2.5 retina
CTGGGCTACT (
4
)
1.8
0.0018
P2.5 retina
TCTGTTTGTT (
4
)
1.8
0.0018
P2.5 retina
TGCTGTACTA (
2
)
1.8
0.0018
P2.5 retina
TTTAGCAAGT (
2
)
1.8
0.0018
P4.5 retina
TGGTTGCTGG (
369
)
150.6
0.1506
P4.5 retina
TGCATCTTAT (
3
)
11.9
0.0119
P4.5 retina
TCAGTAAAAA (
4
)
7.9
0.0079
P4.5 retina
CCTTTAATTC (
36
)
4
0.004
P4.5 retina
CCTTTAGTCC (
27
)
4
0.004
P4.5 retina
CTGGGCTACT (
4
)
2
0.002
P4.5 retina
TTTAGCAAGT (
2
)
2
0.002
P6.5 retina
TGGTTGCTGG (
369
)
156.7
0.1567
P6.5 retina
CCTTTAATTC (
36
)
5
0.005
P6.5 retina
TCAGTAAAAA (
4
)
5
0.005
P6.5 retina
CCTTTAGTCC (
27
)
3.3
0.0033
P6.5 retina
TGCATCTTAT (
3
)
3.3
0.0033
P6.5 retina
CTGGGCTACT (
4
)
1.7
0.0017
P6.5 retina
GAAGAAAAAG (
22
)
1.7
0.0017
P6.5 retina
TCTGGAAAAT
(
4
)
1.7
0.0017
P6.5 retina
TTTAGCAAGT (
2
)
1.7
0.0017
P6.5 retina
TTTTAAAGAC
(
3
)
1.7
0.0017
P10.5 crx- retina
TGGTTGCTGG (
369
)
280.5
0.2805
P10.5 crx- retina
TGCATCTTAT (
3
)
5.6
0.0056
P10.5 crx- retina
TCAGTAAAAA (
4
)
3.7
0.0037
P10.5 crx- retina
CCTTTAATTC (
36
)
1.9
0.0019
P10.5 crx- retina
CCTTTAGTCC (
27
)
1.9
0.0019
P10.5 crx- retina
CTGGGCTACT (
4
)
1.9
0.0019
P10.5 crx- retina
GAAGAAAAAG (
22
)
1.9
0.0019
P10.5 crx+ retina
TGGTTGCTGG (
369
)
101.9
0.1019
P10.5 crx+ retina
CCTTTAGTCC (
27
)
5.8
0.0058
P10.5 crx+ retina
TTTAGCAAGT (
2
)
5.8
0.0058
P10.5 crx+ retina
TCAGTAAAAA (
4
)
1.9
0.0019
P10.5 crx+ retina
TCTGTAACAT (
5
)
1.9
0.0019
P10.5 crx+ retina
TGCATCTTAT (
3
)
1.9
0.0019
Adult retinal
TGGTTGCTGG (
369
)
214.8
0.2148
Adult retinal
TCAGTAAAAA (
4
)
7.4
0.0074
Adult retinal
TGCATCTTAT (
3
)
5.6
0.0056
Adult retinal
CCTTTAGTCC (
27
)
3.7
0.0037
Adult retinal
CTGGGCTACT (
4
)
3.7
0.0037
Adult retinal
CCTTTAATTC (
36
)
1.9
0.0019
ONL
TGGTTGCTGG (
369
)
398.4
0.3984
ONL
CCTTTAGTCC (
27
)
7.7
0.0077
ONL
TCAGTAAAAA (
4
)
7.7
0.0077
ONL
CCTTTAATTC (
36
)
3.8
0.0038
ONL
CCTTTAGTCT (
7
)
1.9
0.0019
