Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.257790
C630007L23Rik
RIKEN cDNA C630007L23 gene
18
240283
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 102 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
AAAAAAAAAA (
658
)
203.9
0.2039
P8 Cb GC
CAGAAAAAAA (
10
)
8.2
0.0082
P8 Cb GC
CGCGTGATGA (
3
)
4.9
0.0049
P8 Cb GC
ATAGTGGAGC
1.6
0.0016
P8 Cb GC
CAGTGAAAAA
1.6
0.0016
P8 Cb GC
GAAGGAGTTA (
7
)
1.6
0.0016
P8 Cb GC
TATTTTGTGC
(
2
)
1.6
0.0016
P8 Cb GC
TTCTAAAATA
(
2
)
1.6
0.0016
Cb medulloblastoma
AAAAAAAAAA (
658
)
797.8
0.7978
Cb medulloblastoma
CAGAAAAAAA (
10
)
9.2
0.0092
Cb medulloblastoma
CGCGTGATGA (
3
)
6.9
0.0069
Cb medulloblastoma
CTTTTGTTTT
(
7
)
4.6
0.0046
Cb medulloblastoma
CAGTGAAAAA
2.3
0.0023
Cb medulloblastoma
GAGGAATCTG
(
5
)
2.3
0.0023
P8 GC+1d culture
AAAAAAAAAA (
658
)
204.3
0.2043
P8 GC+1d culture
CTTTTGTTTT
(
7
)
2.3
0.0023
P8 GC+1d culture
CAGAAAAAAA (
10
)
1.1
0.0011
P8 GC+1d culture
CAGTGAAAAA
1.1
0.0011
P8 GC+1d culture
CGCGTGATGA (
3
)
1.1
0.0011
P8 GC+SHH+1d culture
AAAAAAAAAA (
658
)
278.7
0.2787
P8 GC+SHH+1d culture
CTTTTGTTTT
(
7
)
9.4
0.0094
P8 GC+SHH+1d culture
ATAGTGGAGC
1.2
0.0012
P8 GC+SHH+1d culture
CAGTGAAAAA
1.2
0.0012
P8 GC+SHH+1d culture
GAAGGAGTTA (
7
)
1.2
0.0012
3T3 fibroblasts
AAAAAAAAAA (
658
)
28
0.028
E15 cortex
AAAAAAAAAA (
658
)
212.8
0.2128
E15 cortex
GAAGGAGTTA (
7
)
24.7
0.0247
E15 cortex
CAGTGAAAAA
4.9
0.0049
E15 cortex
CTTTTGTTTT
(
7
)
4.9
0.0049
P1 cortex
AAAAAAAAAA (
658
)
245.4
0.2454
P1 cortex
CTTTTGTTTT
(
7
)
9.1
0.0091
P1 cortex
GAAGGAGTTA (
7
)
9.1
0.0091
P1 cortex
CAGTGAAAAA
4.5
0.0045
Hypothalamus
AAAAAAAAAA (
658
)
123.2
0.1232
Hypothalamus
CTTTTGTTTT
(
7
)
3.6
0.0036
Hypothalamus
GAAGGAGTTA (
7
)
3.6
0.0036
Hypothalamus
GAGGAATCTG
(
5
)
1.8
0.0018
E12.5 retina
AAAAAAAAAA (
658
)
138.9
0.1389
E12.5 retina
GAAGGAGTTA (
7
)
5.6
0.0056
E12.5 retina
CAGAAAAAAA (
10
)
1.9
0.0019
E12.5 retina
CAGTGAAAAA
1.9
0.0019
E12.5 retina
TTCTAAAATA
(
2
)
1.9
0.0019
E14.5 retina
AAAAAAAAAA (
658
)
94.7
0.0947
E14.5 retina
GAAGGAGTTA (
7
)
56.5
0.0565
E14.5 retina
CAGTGAAAAA
3.6
0.0036
E14.5 retina
CAGAAAAAAA (
10
)
1.8
0.0018
E14.5 retina
CTTTTGTTTT
(
7
)
1.8
0.0018
E16.5 retina
AAAAAAAAAA (
658
)
43.5
0.0435
E16.5 retina
GAAGGAGTTA (
7
)
9.1
0.0091
E16.5 retina
CAGTGAAAAA
3.6
0.0036
E16.5 retina
CGCGTGATGA (
3
)
1.8
0.0018
E18.5 retina
AAAAAAAAAA (
658
)
374.7
0.3747
E18.5 retina
CAGTGAAAAA
3.6
0.0036
E18.5 retina
CAGAAAAAAA (
10
)
1.8
0.0018
E18.5 retina
CTTTTGTTTT
(
7
)
1.8
0.0018
P0.5 retina
AAAAAAAAAA (
658
)
117.8
0.1178
P0.5 retina
GAAGGAGTTA (
7
)
7.9
0.0079
P0.5 retina
CAGAAAAAAA (
10
)
5.9
0.0059
P0.5 retina
TATTTTGTGC
(
2
)
2
0.002
P2.5 retina
AAAAAAAAAA (
658
)
329.1
0.3291
P2.5 retina
GAAGGAGTTA (
7
)
5.3
0.0053
P2.5 retina
CAGAAAAAAA (
10
)
3.5
0.0035
P2.5 retina
CAGTGAAAAA
1.8
0.0018
P2.5 retina
GAGGAATCTG
(
5
)
1.8
0.0018
P4.5 retina
AAAAAAAAAA (
658
)
283.3
0.2833
P4.5 retina
CAGAAAAAAA (
10
)
5.9
0.0059
P4.5 retina
GAAGGAGTTA (
7
)
5.9
0.0059
P4.5 retina
CAGTGAAAAA
4
0.004
P4.5 retina
CTTTTGTTTT
(
7
)
4
0.004
P4.5 retina
ATTGATAGGA (
2
)
2
0.002
P4.5 retina
GAGGAATCTG
(
5
)
2
0.002
P6.5 retina
AAAAAAAAAA (
658
)
266.8
0.2668
P6.5 retina
CTTTTGTTTT
(
7
)
6.7
0.0067
P6.5 retina
GAAGGAGTTA (
7
)
6.7
0.0067
P6.5 retina
ATTGATAGGA (
2
)
1.7
0.0017
P6.5 retina
CAGAAAAAAA (
10
)
1.7
0.0017
P6.5 retina
CAGTGAAAAA
1.7
0.0017
P6.5 retina
CGCGTGATGA (
3
)
1.7
0.0017
P6.5 retina
TTCTAAAATA
(
2
)
1.7
0.0017
P10.5 crx- retina
AAAAAAAAAA (
658
)
44.6
0.0446
P10.5 crx- retina
GAAGGAGTTA (
7
)
9.3
0.0093
P10.5 crx- retina
CTTTTGTTTT
(
7
)
3.7
0.0037
P10.5 crx- retina
CAGAAAAAAA (
10
)
1.9
0.0019
P10.5 crx- retina
TATTTTGTGC
(
2
)
1.9
0.0019
P10.5 crx+ retina
AAAAAAAAAA (
658
)
96.1
0.0961
P10.5 crx+ retina
CAGTGAAAAA
9.6
0.0096
P10.5 crx+ retina
CAGAAAAAAA (
10
)
5.8
0.0058
P10.5 crx+ retina
CTTTTGTTTT
(
7
)
3.8
0.0038
P10.5 crx+ retina
GAAGGAGTTA (
7
)
3.8
0.0038
P10.5 crx+ retina
GAGGAATCTG
(
5
)
1.9
0.0019
Adult retinal
AAAAAAAAAA (
658
)
57.4
0.0574
Adult retinal
GAAGGAGTTA (
7
)
18.5
0.0185
Adult retinal
ATTGATAGGA (
2
)
5.6
0.0056
Adult retinal
CAGTGAAAAA
3.7
0.0037
Adult retinal
ATAGTGGAGC
1.9
0.0019
Adult retinal
CTTTTGTTTT
(
7
)
1.9
0.0019
Adult retinal
TATTTTGTGC
(
2
)
1.9
0.0019
ONL
AAAAAAAAAA (
658
)
103.4
0.1034
ONL
GAAGGAGTTA (
7
)
38.3
0.0383
ONL
CAGTGAAAAA
11.5
0.0115
ONL
ATTGATAGGA (
2
)
7.7
0.0077
ONL
CTTTTGTTTT
(
7
)
3.8
0.0038
