Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2580	Sdc1	syndecan 1	12	12 1.0 cM	20969
Gene Ontology	cytoskeletal protein binding | extracellular space | integral to membrane | membrane
Human Homolog	SDC1[syndecan 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 34 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGTGGTCAAG GACTCAGGGC (2) 14.7 0.0147 Cb medulloblastoma AGTGGTCAAG 13.9 0.0139 P8 GC+1d culture AGTGGTCAAG GACTCAGGGC (2) GCTGGATGTG TCCTCTGCAC (2) 6.8 0.0068 P8 GC+SHH+1d culture AGTGGTCAAG CTGCCCAGAC GACTCAGGGC (2) 9.4 0.0094 3T3 fibroblasts AGTGGTCAAG GACTCAGGGC (2) 10.5 0.0105 E15 cortex AGTGGTCAAG 4.9 0.0049 P1 cortex AGTGGTCAAG 4.5 0.0045 Hypothalamus AGTGGTCAAG 19.9 0.0199 E12.5 retina AGTGGTCAAG GACTCAGGGC (2) GCTGGATGTG TCCTCTGCAC (2) 20.7 0.0207 E14.5 retina AGTGGTCAAG CTGCCCAGAC 9.1 0.0091 E16.5 retina AGTGGTCAAG CTGCCCAGAC 12.7 0.0127 E18.5 retina AGTGGTCAAG 14.6 0.0146 P0.5 retina AGTGGTCAAG GACTCAGGGC (2) 5.9 0.0059 P2.5 retina AGTGGTCAAG 5.3 0.0053 P4.5 retina AGTGGTCAAG 9.9 0.0099 P6.5 retina AGTGGTCAAG 3.3 0.0033 P10.5 crx- retina AGTGGTCAAG GCTGGATGTG 5.6 0.0056 P10.5 crx+ retina AGTGGTCAAG 1.9 0.0019 Adult retinal AGTGGTCAAG 1.9 0.0019 ONL AGTGGTCAAG 1.9 0.0019