Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.259223	Rpap1	RNA polymerase II associated protein 1	2		68925
Gene Ontology	biological_process unknown | protein binding | RNA polymerase complex
Human Homolog	RPAP1[RNA polymerase II associated protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 55 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture ATGTCATCAA (4) 13.7 0.0137 P8 GC+1d culture ATACTGGAGC 4.6 0.0046 P8 GC+1d culture ATGTAATAAG (3) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture ATGTCATCAA (4) 12.9 0.0129 P8 GC+SHH+1d culture ATACTGGAGC 1.2 0.0012 P8 GC+SHH+1d culture ATGTAATAAG (3) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex ATGTCATCAA (4) 9.9 0.0099 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex ATGTCATCAA (4) 9.1 0.0091 P1 cortex ATACTGGAGC 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus ATACTGGAGC 3.6 0.0036 Hypothalamus ATGTCATCAA (4) 3.6 0.0036 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina ATGTCATCAA (4) 11.3 0.0113 E12.5 retina ATACTGGAGC 3.8 0.0038 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina ATGTCATCAA (4) 7.3 0.0073 E14.5 retina ATACTGGAGC 3.6 0.0036 E14.5 retina TGGTGAAGGG (2) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina ATGTCATCAA (4) 10.9 0.0109 E16.5 retina ATACTGGAGC 1.8 0.0018 E16.5 retina TGGTGAAGGG (2) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina ATGTCATCAA (4) 7.3 0.0073 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina ATACTGGAGC 7.9 0.0079 P0.5 retina ATGTCATCAA (4) 7.9 0.0079 P0.5 retina TGGTGAAGGG (2) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina ATACTGGAGC 1.8 0.0018 P2.5 retina ATGTAATAAG (3) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina ATACTGGAGC 2 0.002 P4.5 retina ATGTCATCAA (4) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina ATGTCATCAA (4) 5 0.005 P6.5 retina ATACTGGAGC 1.7 0.0017 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina ATGTCATCAA (4) 5.6 0.0056 P10.5 crx- retina ATACTGGAGC 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal ATGTCATCAA (4) 14.8 0.0148 Adult retinal ATACTGGAGC 5.6 0.0056 ONL CCTTTAATCC (355) 84.3 0.0843 ONL ATGTCATCAA (4) 9.6 0.0096 ONL ATACTGGAGC 1.9 0.0019