Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.259227	C330039G02Rik	RIKEN cDNA C330039G02 gene	4		230700
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	FOXJ3[forkhead box J3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 77 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGGTGCTGG (64) 8.2 0.0082 P8 Cb GC AATAAACTTA (9) 6.5 0.0065 P8 Cb GC GATGGCACTT 1.6 0.0016 Cb medulloblastoma AATAAACTTA (9) 16.2 0.0162 Cb medulloblastoma TGGGTGCTGG (64) 9.2 0.0092 Cb medulloblastoma GATGGCACTT 6.9 0.0069 Cb medulloblastoma GGAGTGAGGA (2) 2.3 0.0023 P8 GC+1d culture GATGGCACTT 12.6 0.0126 P8 GC+1d culture TGGGTGCTGG (64) 5.7 0.0057 P8 GC+1d culture AATAAACTTA (9) 3.4 0.0034 P8 GC+SHH+1d culture GATGGCACTT 10.5 0.0105 P8 GC+SHH+1d culture AATAAACTTA (9) 3.5 0.0035 P8 GC+SHH+1d culture TGGGTGCTGG (64) 3.5 0.0035 3T3 fibroblasts TGGGTGCTGG (64) 17.5 0.0175 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AATAAACTTA (9) 3.5 0.0035 3T3 fibroblasts GATGGCACTT 3.5 0.0035 E15 cortex TGGGTGCTGG (64) 14.8 0.0148 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex TGGGTGCTGG (64) 13.6 0.0136 P1 cortex GATGGCACTT 4.5 0.0045 Hypothalamus AATAAACTTA (9) 14.5 0.0145 Hypothalamus GATGGCACTT 9.1 0.0091 Hypothalamus TGGGTGCTGG (64) 9.1 0.0091 Hypothalamus ACCCAGCAAA (4) 1.8 0.0018 E12.5 retina AATAAACTTA (9) 16.9 0.0169 E12.5 retina GATGGCACTT 13.1 0.0131 E12.5 retina TGGGTGCTGG (64) 9.4 0.0094 E14.5 retina TGGGTGCTGG (64) 54.7 0.0547 E14.5 retina AATAAACTTA (9) 5.5 0.0055 E14.5 retina GATGGCACTT 1.8 0.0018 E14.5 retina GGAGTGAGGA (2) 1.8 0.0018 E16.5 retina TGGGTGCTGG (64) 41.7 0.0417 E16.5 retina AATAAACTTA (9) 7.2 0.0072 E16.5 retina GATGGCACTT 3.6 0.0036 E16.5 retina GGAGTGAGGA (2) 1.8 0.0018 E18.5 retina TGGGTGCTGG (64) 20 0.02 E18.5 retina GATGGCACTT 12.7 0.0127 E18.5 retina AATAAACTTA (9) 7.3 0.0073 E18.5 retina CCTTAAGAAA (2) 1.8 0.0018 P0.5 retina TGGGTGCTGG (64) 11.8 0.0118 P0.5 retina GATGGCACTT 3.9 0.0039 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AATAAACTTA (9) 2 0.002 P2.5 retina TGGGTGCTGG (64) 17.6 0.0176 P2.5 retina AATAAACTTA (9) 12.3 0.0123 P2.5 retina GATGGCACTT 3.5 0.0035 P2.5 retina ACCCAGCAAA (4) 1.8 0.0018 P2.5 retina GGAGTGAGGA (2) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina AATAAACTTA (9) 23.8 0.0238 P4.5 retina GATGGCACTT 11.9 0.0119 P4.5 retina TGGGTGCTGG (64) 9.9 0.0099 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina AATAAACTTA (9) 15 0.015 P6.5 retina GATGGCACTT 15 0.015 P6.5 retina TGGGTGCTGG (64) 13.3 0.0133 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina ACCCAGCAAA (4) 1.7 0.0017 P10.5 crx- retina TGGGTGCTGG (64) 20.4 0.0204 P10.5 crx- retina AATAAACTTA (9) 3.7 0.0037 P10.5 crx- retina ACCCAGCAAA (4) 1.9 0.0019 P10.5 crx- retina CCTTAAGAAA (2) 1.9 0.0019 P10.5 crx- retina GATGGCACTT 1.9 0.0019 P10.5 crx+ retina TGGGTGCTGG (64) 15.4 0.0154 P10.5 crx+ retina AATAAACTTA (9) 13.5 0.0135 P10.5 crx+ retina GATGGCACTT 5.8 0.0058 Adult retinal TGGGTGCTGG (64) 13 0.013 Adult retinal GATGGCACTT 9.3 0.0093 Adult retinal AATAAACTTA (9) 3.7 0.0037 Adult retinal CCTTAAGAAA (2) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL TGGGTGCTGG (64) 40.2 0.0402 ONL GTCATAGCTG (590) 5.7 0.0057 ONL AATAAACTTA (9) 3.8 0.0038 ONL GATGGCACTT 3.8 0.0038 ONL CCTTAAGAAA (2) 1.9 0.0019