Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.260374	Sema5a	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	15	15 19.7 cM	20356
Gene Ontology	axon guidance | axon guidance receptor activity | development | extracellular space | integral to membrane | integral to membrane | membrane | neurogenesis | receptor activity
Human Homolog	SEMA5A[sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTTCCCAG (4) 8.2 0.0082 P8 Cb GC TGGCCAAGAT (4) 3.3 0.0033 P8 Cb GC GAAACCTGTC (5) 1.6 0.0016 P8 Cb GC TTAATGTGAG (2) 1.6 0.0016 Cb medulloblastoma GATTTCCCAG (4) 11.6 0.0116 Cb medulloblastoma CACTCAAAAA (6) 4.6 0.0046 Cb medulloblastoma AAGCAAAGAG (2) 2.3 0.0023 Cb medulloblastoma GAAACCTGTC (5) 2.3 0.0023 P8 GC+1d culture GATTTCCCAG (4) 8 0.008 P8 GC+1d culture TTTCTTTTCT (5) 4.6 0.0046 P8 GC+1d culture AAGCAAAGAG (2) 3.4 0.0034 P8 GC+SHH+1d culture GATTTCCCAG (4) 12.9 0.0129 P8 GC+SHH+1d culture GAAACCTGTC (5) 2.3 0.0023 P8 GC+SHH+1d culture CACTCAAAAA (6) 1.2 0.0012 3T3 fibroblasts GATTTCCCAG (4) 14 0.014 3T3 fibroblasts GAAACCTGTC (5) 3.5 0.0035 E15 cortex GAAACCTGTC (5) 9.9 0.0099 E15 cortex GAACCAATTA 4.9 0.0049 E15 cortex TTAATGTGAG (2) 4.9 0.0049 P1 cortex GATTTCCCAG (4) 9.1 0.0091 P1 cortex TTTCTTTTCT (5) 4.5 0.0045 Hypothalamus GAAACCTGTC (5) 1.8 0.0018 Hypothalamus GATTTCCCAG (4) 1.8 0.0018 E12.5 retina GATTTCCCAG (4) 24.4 0.0244 E12.5 retina GAAACCTGTC (5) 11.3 0.0113 E12.5 retina AAGCAAAGAG (2) 1.9 0.0019 E12.5 retina GAACCAATTG (2) 1.9 0.0019 E14.5 retina GATTTCCCAG (4) 9.1 0.0091 E14.5 retina GAAACCTGTC (5) 7.3 0.0073 E14.5 retina GAACCAATTG (2) 1.8 0.0018 E16.5 retina GATTTCCCAG (4) 3.6 0.0036 E18.5 retina GATTTCCCAG (4) 18.2 0.0182 E18.5 retina GAAACCTGTC (5) 1.8 0.0018 E18.5 retina GAACCAATTA 1.8 0.0018 E18.5 retina TTAATGTGAG (2) 1.8 0.0018 P0.5 retina GATTTCCCAG (4) 17.7 0.0177 P0.5 retina TTAATGTGAG (2) 2 0.002 P2.5 retina GATTTCCCAG (4) 14.1 0.0141 P2.5 retina GAAACCTGTC (5) 5.3 0.0053 P4.5 retina GATTTCCCAG (4) 7.9 0.0079 P4.5 retina GAAACCTGTC (5) 5.9 0.0059 P4.5 retina TGGCCAAGAT (4) 2 0.002 P4.5 retina TTAATGTGAG (2) 2 0.002 P6.5 retina GATTTCCCAG (4) 11.7 0.0117 P6.5 retina GAAACCTGTC (5) 6.7 0.0067 P6.5 retina GAACCAATTA 1.7 0.0017 P6.5 retina GAACCAATTG (2) 1.7 0.0017 P6.5 retina TTTCTTTTCT (5) 1.7 0.0017 P10.5 crx- retina GATTTCCCAG (4) 5.6 0.0056 P10.5 crx- retina GAAACCTGTC (5) 1.9 0.0019 P10.5 crx+ retina GATTTCCCAG (4) 11.5 0.0115 Adult retinal GAAACCTGTC (5) 1.9 0.0019 Adult retinal GATTTCCCAG (4) 1.9 0.0019 ONL GATTTCCCAG (4) 5.7 0.0057 ONL TTAATGTGAG (2) 5.7 0.0057 ONL GAAACCTGTC (5) 1.9 0.0019