| Library | Tag (Other Genes) | Normalized Count | % in library |
| P8 Cb GC | TAATTCTCAG
| 1.6 | 0.0016 |
| Cb medulloblastoma | TAACACCACA TAATTCTCAG TTGAATAAAA
| 6.9 | 0.0069 |
| P8 GC+1d culture | ATTTCTGCAT CCCTATTAAG CCTATTATGT (2) TAATTCTCAG TTGAATAAAA
| 11.4 | 0.0114 |
| P8 GC+SHH+1d culture | CCCTATTAAG CCTATTATGT (2) TAATTCTCAG
| 5.8 | 0.0058 |
| 3T3 fibroblasts | CCCTATTAAG
| 7 | 0.007 |
| E15 cortex | CCCTATTAAG TAATTCTCAG
| 9.8 | 0.0098 |
| P1 cortex | CCCTATTAAG GATGCTCCTC TAATTCTCAG
| 27.2 | 0.0272 |
| Hypothalamus | ATTTCTGCAT TTGAATAAAA
| 3.6 | 0.0036 |
| E12.5 retina | ATTTCTGCAT CCTATTATGT (2) TAATTCTCAG
| 9.4 | 0.0094 |
| E14.5 retina | CCCTATTAAG TAATTCTCAG TTGAATAAAA
| 9 | 0.009 |
| E16.5 retina | GATGCTCCTC
| 3.6 | 0.0036 |
| E18.5 retina | CCCTATTAAG TAATTCTCAG
| 3.6 | 0.0036 |
| P0.5 retina | ATTTCTGCAT CCTATTATGT (2)
| 4 | 0.004 |
| P2.5 retina | ATTTCTGCAT GATGCTCCTC
| 5.3 | 0.0053 |
| P4.5 retina | ATTTCTGCAT CCTATTATGT (2)
| 9.9 | 0.0099 |
| P6.5 retina | CCTATTATGT (2) GATGCTCCTC
| 5 | 0.005 |
| P10.5 crx- retina | ATTTCTGCAT CCCTATTAAG GATGCTCCTC
| 5.7 | 0.0057 |
| P10.5 crx+ retina | ATTTCTGCAT CCTATTATGT (2) TAACACCACA
| 11.5 | 0.0115 |
| Adult retinal | ATTTCTGCAT CCCTATTAAG GATGCTCCTC
| 26 | 0.026 |
| ONL | CCCTATTAAG TAATTCTCAG
| 5.7 | 0.0057 |