Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.262859	Rnf38	ring finger protein 38	4		73469
Gene Ontology	protein binding
Human Homolog	RNF38[ring finger protein 38]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 89 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGTCTCTGT (3) CCAAGGTGTT GCCTCCGTGA GCGCTGTTTG TCTTGATCCT 13 0.013 Cb medulloblastoma GCGCTGTTTG TTTAAAAAAA (3) 9.2 0.0092 P8 GC+1d culture CCAAGGTGTT GCCTCCGTGA GCGCTGTTTG GGACTACTTA GGCAACAATG (2) TATATATGGA (3) TGAATATTTT TGTGATTTTG 13.4 0.0134 P8 GC+SHH+1d culture AATCGCGATA ACCTGATTTT ATGTCTCTGT (3) GCGCTGTTTG GGACTACTTA TCTTGATCCT TGAATATTTT TTTAAAAAAA (3) 18.9 0.0189 3T3 fibroblasts GGACTACTTA TCTTGATCCT 10.5 0.0105 E15 cortex GCGCTGTTTG TGAAGAGGAA (2) 14.8 0.0148 P1 cortex ATGTCTCTGT (3) GCGCTGTTTG 22.7 0.0227 Hypothalamus ATGTCTCTGT (3) TTTAAAAAAA (3) 12.7 0.0127 E12.5 retina AATCGCGATA ATGTCTCTGT (3) TGAATATTTT TTTAAAAAAA (3) 9.5 0.0095 E14.5 retina ATGTCTCTGT (3) TATATATGGA (3) TGAATATTTT TTTAAAAAAA (3) 21.8 0.0218 E16.5 retina ATGTCTCTGT (3) ATTACGCCAA GCCTCCGTGA GCGCTGTTTG GGCAACAATG (2) TGAAGAGGAA (2) TTTAAAAAAA (3) 18 0.018 E18.5 retina ATGTCTCTGT (3) GCGCTGTTTG TTTAAAAAAA (3) 16.3 0.0163 P0.5 retina AATCGCGATA ATTACGCCAA CCAAGGTGTT GCGCTGTTTG TGAAGAGGAA (2) TGTGATTTTG TTTAAAAAAA (3) 14 0.014 P2.5 retina AATCGCGATA ATGTCTCTGT (3) CCAAGGTGTT GCGCTGTTTG TTTAAAAAAA (3) 15.9 0.0159 P4.5 retina AATCGCGATA ATGTCTCTGT (3) GCCTCCGTGA GGCAACAATG (2) TGAATATTTT TTTAAAAAAA (3) 25.8 0.0258 P6.5 retina ATGTCTCTGT (3) GCGCTGTTTG TATATATGGA (3) TGTGATTTTG TTTAAAAAAA (3) 15.1 0.0151 P10.5 crx- retina ATGTCTCTGT (3) GCGCTGTTTG TATATATGGA (3) TGAAGAGGAA (2) 13.1 0.0131 P10.5 crx+ retina ATGTCTCTGT (3) GGACTACTTA TGAATATTTT 13.4 0.0134 Adult retinal AATCGCGATA ATTACGCCAA GCGCTGTTTG GGCAACAATG (2) TATATATGGA (3) TGTGATTTTG 13.2 0.0132 ONL AATCGCGATA ACCTGATTTT TGAATATTTT TTTAAAAAAA (3) 15.3 0.0153