Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.27005
Vsnl1
visinin-like 1
12
26950
Gene Ontology
calcium ion binding
Human Homolog
VSNL1[visinin-like 1]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 68 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGAAAAAAAA (
81
)
27.7
0.0277
P8 Cb GC
GAGGACCTGG
(
8
)
24.5
0.0245
P8 Cb GC
TAATATTTAA
1.6
0.0016
P8 Cb GC
TTTTGCTAAT
(
2
)
1.6
0.0016
Cb medulloblastoma
TGAAAAAAAA (
81
)
78.6
0.0786
Cb medulloblastoma
TAATATTTAA
25.4
0.0254
Cb medulloblastoma
AGAATGTCAT
(
2
)
4.6
0.0046
Cb medulloblastoma
GAGGACCTGG
(
8
)
4.6
0.0046
Cb medulloblastoma
CCTTTTGGGT
(
4
)
2.3
0.0023
P8 GC+1d culture
TGAAAAAAAA (
81
)
26.3
0.0263
P8 GC+1d culture
GAGGACCTGG
(
8
)
13.7
0.0137
P8 GC+1d culture
TTTTGCTAAT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
TGAAAAAAAA (
81
)
57.4
0.0574
P8 GC+SHH+1d culture
GAGGACCTGG
(
8
)
22.2
0.0222
P8 GC+SHH+1d culture
TTTTGCTAAT
(
2
)
3.5
0.0035
3T3 fibroblasts
TGAAAAAAAA (
81
)
7
0.007
3T3 fibroblasts
GAGGACCTGG
(
8
)
3.5
0.0035
E15 cortex
TGAAAAAAAA (
81
)
29.7
0.0297
E15 cortex
GAGGACCTGG
(
8
)
24.7
0.0247
P1 cortex
GAGGACCTGG
(
8
)
13.6
0.0136
P1 cortex
TAATATTTAA
9.1
0.0091
P1 cortex
TGAAAAAAAA (
81
)
4.5
0.0045
Hypothalamus
TAATATTTAA
38
0.038
Hypothalamus
TGAAAAAAAA (
81
)
36.2
0.0362
Hypothalamus
GAGGACCTGG
(
8
)
7.2
0.0072
Hypothalamus
CCATATTGAT
(
2
)
5.4
0.0054
Hypothalamus
AGAATGTCAT
(
2
)
1.8
0.0018
Hypothalamus
TTTTGCTAAT
(
2
)
1.8
0.0018
E12.5 retina
TGAAAAAAAA (
81
)
31.9
0.0319
E12.5 retina
GAGGACCTGG
(
8
)
11.3
0.0113
E14.5 retina
TGAAAAAAAA (
81
)
49.2
0.0492
E14.5 retina
GAGGACCTGG
(
8
)
10.9
0.0109
E14.5 retina
TAATATTTAA
1.8
0.0018
E16.5 retina
GAGGACCTGG
(
8
)
18.1
0.0181
E16.5 retina
TGAAAAAAAA (
81
)
16.3
0.0163
E16.5 retina
AGAATGTCAT
(
2
)
1.8
0.0018
E16.5 retina
TAATATTTAA
1.8
0.0018
E18.5 retina
TGAAAAAAAA (
81
)
74.6
0.0746
E18.5 retina
GAGGACCTGG
(
8
)
12.7
0.0127
E18.5 retina
TAATATTTAA
1.8
0.0018
P0.5 retina
GAGGACCTGG
(
8
)
15.7
0.0157
P0.5 retina
TGAAAAAAAA (
81
)
15.7
0.0157
P2.5 retina
TGAAAAAAAA (
81
)
42.2
0.0422
P2.5 retina
GAGGACCTGG
(
8
)
22.9
0.0229
P2.5 retina
CCTTTTGGGT
(
4
)
1.8
0.0018
P2.5 retina
TTTTGCTAAT
(
2
)
1.8
0.0018
P4.5 retina
TGAAAAAAAA (
81
)
43.6
0.0436
P4.5 retina
GAGGACCTGG
(
8
)
25.8
0.0258
P4.5 retina
TTTTGCTAAT
(
2
)
2
0.002
P6.5 retina
TGAAAAAAAA (
81
)
33.3
0.0333
P6.5 retina
GAGGACCTGG
(
8
)
10
0.01
P6.5 retina
AGAATGTCAT
(
2
)
1.7
0.0017
P6.5 retina
TAATATTTAA
1.7
0.0017
P10.5 crx- retina
TGAAAAAAAA (
81
)
9.3
0.0093
P10.5 crx- retina
GAGGACCTGG
(
8
)
7.4
0.0074
P10.5 crx- retina
CCTTTTGGGT
(
4
)
1.9
0.0019
P10.5 crx- retina
TAATATTTAA
1.9
0.0019
P10.5 crx+ retina
TGAAAAAAAA (
81
)
19.2
0.0192
P10.5 crx+ retina
GAGGACCTGG
(
8
)
5.8
0.0058
P10.5 crx+ retina
TAATATTTAA
5.8
0.0058
P10.5 crx+ retina
AGAATGTCAT
(
2
)
1.9
0.0019
P10.5 crx+ retina
CCTTTTGGGT
(
4
)
1.9
0.0019
Adult retinal
TGAAAAAAAA (
81
)
13
0.013
Adult retinal
GAGGACCTGG
(
8
)
7.4
0.0074
Adult retinal
CCTTTTGGGT
(
4
)
1.9
0.0019
Adult retinal
TTTTGCTAAT
(
2
)
1.9
0.0019
ONL
TGAAAAAAAA (
81
)
19.2
0.0192
ONL
GAGGACCTGG
(
8
)
3.8
0.0038
