Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271944	Rab1	RAB1, member RAS oncogene family	11	11 10.9 cM	19324
Gene Ontology	DNA binding | endoplasmic reticulum | Golgi apparatus | GTP binding | GTPase activity | intracellular | intracellular protein transport | protein transport | protein transporter activity | regulation of transcription, DNA-dependent | small GTPase mediated signal transduction | two-component signal transduction system (phosphorelay) | vesicle-mediated transport
Human Homolog	RAB1A[RAB1A, member RAS oncogene family]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 115 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAAACAAGGG (9) 3.3 0.0033 P8 Cb GC GTACAAAAAT (4) 3.3 0.0033 P8 Cb GC TTTAGATGTT 3.3 0.0033 P8 Cb GC ATTCCGAATT (107) 1.6 0.0016 P8 Cb GC CAAAATTTCA (2) 1.6 0.0016 P8 Cb GC CCTGTAATCT (9) 1.6 0.0016 P8 Cb GC CTCAGTCTGA 1.6 0.0016 Cb medulloblastoma GTACAAAAAT (4) 13.9 0.0139 Cb medulloblastoma CTCAGAAAGC (5) 11.6 0.0116 Cb medulloblastoma TTTAGATGTT 4.6 0.0046 P8 GC+1d culture GTACAAAAAT (4) 10.3 0.0103 P8 GC+1d culture TTTAGATGTT 9.1 0.0091 P8 GC+1d culture CTCAGAAAGC (5) 4.6 0.0046 P8 GC+1d culture GAAACAAGGG (9) 2.3 0.0023 P8 GC+1d culture CAAAATTTCA (2) 1.1 0.0011 P8 GC+1d culture CCAATATAAA 1.1 0.0011 P8 GC+1d culture TATTTCAATT 1.1 0.0011 P8 GC+SHH+1d culture GTACAAAAAT (4) 9.4 0.0094 P8 GC+SHH+1d culture CTCAGAAAGC (5) 2.3 0.0023 P8 GC+SHH+1d culture CTCAGTCTGA 2.3 0.0023 P8 GC+SHH+1d culture CCAATATAAA 1.2 0.0012 P8 GC+SHH+1d culture GGGGAAAGAG (8) 1.2 0.0012 P8 GC+SHH+1d culture TTTAGATGTT 1.2 0.0012 3T3 fibroblasts CCTGTAATCT (9) 10.5 0.0105 3T3 fibroblasts ACGATGGCAG 3.5 0.0035 3T3 fibroblasts GTACAAAAAT (4) 3.5 0.0035 3T3 fibroblasts TTTAGATGTT 3.5 0.0035 E15 cortex CTCAGAAAGC (5) 4.9 0.0049 E15 cortex GTACAAAAAT (4) 4.9 0.0049 E15 cortex TATTTCAATT 4.9 0.0049 P1 cortex TTTTCATTTA (3) 4.5 0.0045 Hypothalamus CTCAGAAAGC (5) 5.4 0.0054 Hypothalamus GTACAAAAAT (4) 5.4 0.0054 Hypothalamus TTTAGATGTT 5.4 0.0054 Hypothalamus ACGATGGCAG 3.6 0.0036 Hypothalamus CAAAATTTCA (2) 3.6 0.0036 E12.5 retina TTTAGATGTT 3.8 0.0038 E12.5 retina CTCAGTCTGA 1.9 0.0019 E12.5 retina GAAACAAGGG (9) 1.9 0.0019 E12.5 retina GTACAAAAAT (4) 1.9 0.0019 E14.5 retina TAATGTTTTC (2) 3.6 0.0036 E14.5 retina ACGATGGCAG 1.8 0.0018 E14.5 retina CAAAATTTCA (2) 1.8 0.0018 E14.5 retina CTGGGGGGGG (4) 1.8 0.0018 E14.5 retina GTACAAAAAT (4) 1.8 0.0018 E14.5 retina TTTTCATTTA (3) 1.8 0.0018 E16.5 retina TTTAGATGTT 3.6 0.0036 E16.5 retina ACGATGGCAG 1.8 0.0018 E16.5 retina CAAAATTTCA (2) 1.8 0.0018 E16.5 retina CCAATATAAA 1.8 0.0018 E16.5 retina GTACAAAAAT (4) 1.8 0.0018 E16.5 retina TATTTCAATT 1.8 0.0018 E18.5 retina GTACAAAAAT (4) 9.1 0.0091 E18.5 retina CAAAATTTCA (2) 7.3 0.0073 E18.5 retina CCAATATAAA 3.6 0.0036 E18.5 retina TTTAGATGTT 3.6 0.0036 E18.5 retina TTTTCATTTA (3) 3.6 0.0036 E18.5 retina CTCAGTCTGA 1.8 0.0018 E18.5 retina TAATGTTTTC (2) 1.8 0.0018 P0.5 retina TTTAGATGTT 9.8 0.0098 P0.5 retina CCAATATAAA 5.9 0.0059 P0.5 retina CCTGTAATCT (9) 3.9 0.0039 P0.5 retina GTACAAAAAT (4) 3.9 0.0039 P0.5 retina CTCAGAAAGC (5) 2 0.002 P2.5 retina GTACAAAAAT (4) 8.8 0.0088 P2.5 retina CTCAGAAAGC (5) 5.3 0.0053 P2.5 retina TTTTCATTTA (3) 5.3 0.0053 P2.5 retina GGGGAAAGAG (8) 3.5 0.0035 P2.5 retina TTTAGATGTT 3.5 0.0035 P2.5 retina ACGATGGCAG 1.8 0.0018 P2.5 retina CCAATATAAA 1.8 0.0018 P2.5 retina CTCAGTCTGA 1.8 0.0018 P2.5 retina CTGGGGGGGG (4) 1.8 0.0018 P2.5 retina TAATGTTTTC (2) 1.8 0.0018 P4.5 retina AACGCTAGAT (2) 4 0.004 P4.5 retina TTTTCATTTA (3) 4 0.004 P4.5 retina ATTCCGAATT (107) 2 0.002 P4.5 retina CAAAATTTCA (2) 2 0.002 P4.5 retina CCTGTAATCT (9) 2 0.002 P4.5 retina CTCAGAAAGC (5) 2 0.002 P4.5 retina GTACAAAAAT (4) 2 0.002 P4.5 retina TTTAGATGTT 2 0.002 P6.5 retina CTCAGAAAGC (5) 6.7 0.0067 P6.5 retina GTACAAAAAT (4) 6.7 0.0067 P6.5 retina TTTAGATGTT 6.7 0.0067 P6.5 retina TTTTCATTTA (3) 5 0.005 P6.5 retina ATTCCGAATT (107) 3.3 0.0033 P6.5 retina CAAAATTTCA (2) 3.3 0.0033 P6.5 retina AACGCTAGAT (2) 1.7 0.0017 P6.5 retina ACGATGGCAG 1.7 0.0017 P6.5 retina CCAATATAAA 1.7 0.0017 P6.5 retina CTCAGTCTGA 1.7 0.0017 P6.5 retina CTGGGGGGGG (4) 1.7 0.0017 P6.5 retina GGGGAAAGAG (8) 1.7 0.0017 P6.5 retina TATTTCAATT 1.7 0.0017 P10.5 crx- retina GTACAAAAAT (4) 14.9 0.0149 P10.5 crx- retina TTTAGATGTT 7.4 0.0074 P10.5 crx- retina CAAAATTTCA (2) 1.9 0.0019 P10.5 crx- retina GAAACAAGGG (9) 1.9 0.0019 P10.5 crx- retina TATTTCAATT 1.9 0.0019 P10.5 crx- retina TTTTCATTTA (3) 1.9 0.0019 P10.5 crx+ retina CTCAGAAAGC (5) 7.7 0.0077 P10.5 crx+ retina TTTAGATGTT 5.8 0.0058 P10.5 crx+ retina CAAAATTTCA (2) 3.8 0.0038 P10.5 crx+ retina CCTGTAATCT (9) 1.9 0.0019 P10.5 crx+ retina TAATGTTTTC (2) 1.9 0.0019 P10.5 crx+ retina TATTTCAATT 1.9 0.0019 Adult retinal GTACAAAAAT (4) 5.6 0.0056 Adult retinal CTCAGAAAGC (5) 3.7 0.0037 Adult retinal TTTAGATGTT 3.7 0.0037 Adult retinal CAAAATTTCA (2) 1.9 0.0019 Adult retinal CTCAGTCTGA 1.9 0.0019 Adult retinal CTGGGGGGGG (4) 1.9 0.0019 ONL ATTCCGAATT (107) 3.8 0.0038 ONL TTTAGATGTT 3.8 0.0038