Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271944	Rab1	RAB1, member RAS oncogene family	11	11 10.9 cM	19324
Gene Ontology	DNA binding | endoplasmic reticulum | Golgi apparatus | GTP binding | GTPase activity | intracellular | intracellular protein transport | protein transport | protein transporter activity | regulation of transcription, DNA-dependent | small GTPase mediated signal transduction | two-component signal transduction system (phosphorelay) | vesicle-mediated transport
Human Homolog	RAB1A[RAB1A, member RAS oncogene family]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 115 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTCCGAATT (2) CAAAATTTCA (2) CCTGTAATCT (2) CTCAGTCTGA GAAACAAGGG GTACAAAAAT TTTAGATGTT 16.3 0.0163 Cb medulloblastoma CTCAGAAAGC (2) GTACAAAAAT TTTAGATGTT 30.1 0.0301 P8 GC+1d culture CAAAATTTCA (2) CCAATATAAA CTCAGAAAGC (2) GAAACAAGGG GTACAAAAAT TATTTCAATT TTTAGATGTT 29.6 0.0296 P8 GC+SHH+1d culture CCAATATAAA CTCAGAAAGC (2) CTCAGTCTGA GGGGAAAGAG (3) GTACAAAAAT TTTAGATGTT 17.6 0.0176 3T3 fibroblasts ACGATGGCAG CCTGTAATCT (2) GTACAAAAAT TTTAGATGTT 21 0.021 E15 cortex CTCAGAAAGC (2) GTACAAAAAT TATTTCAATT 14.7 0.0147 P1 cortex TTTTCATTTA 4.5 0.0045 Hypothalamus ACGATGGCAG CAAAATTTCA (2) CTCAGAAAGC (2) GTACAAAAAT TTTAGATGTT 23.4 0.0234 E12.5 retina CTCAGTCTGA GAAACAAGGG GTACAAAAAT TTTAGATGTT 9.5 0.0095 E14.5 retina ACGATGGCAG CAAAATTTCA (2) CTGGGGGGGG GTACAAAAAT TAATGTTTTC (2) TTTTCATTTA 12.6 0.0126 E16.5 retina ACGATGGCAG CAAAATTTCA (2) CCAATATAAA GTACAAAAAT TATTTCAATT TTTAGATGTT 12.6 0.0126 E18.5 retina CAAAATTTCA (2) CCAATATAAA CTCAGTCTGA GTACAAAAAT TAATGTTTTC (2) TTTAGATGTT TTTTCATTTA 30.8 0.0308 P0.5 retina CCAATATAAA CCTGTAATCT (2) CTCAGAAAGC (2) GTACAAAAAT TTTAGATGTT 25.5 0.0255 P2.5 retina ACGATGGCAG CCAATATAAA CTCAGAAAGC (2) CTCAGTCTGA CTGGGGGGGG GGGGAAAGAG (3) GTACAAAAAT TAATGTTTTC (2) TTTAGATGTT TTTTCATTTA 35.4 0.0354 P4.5 retina AACGCTAGAT (2) ATTCCGAATT (2) CAAAATTTCA (2) CCTGTAATCT (2) CTCAGAAAGC (2) GTACAAAAAT TTTAGATGTT TTTTCATTTA 20 0.02 P6.5 retina AACGCTAGAT (2) ACGATGGCAG ATTCCGAATT (2) CAAAATTTCA (2) CCAATATAAA CTCAGAAAGC (2) CTCAGTCTGA CTGGGGGGGG GGGGAAAGAG (3) GTACAAAAAT TATTTCAATT TTTAGATGTT TTTTCATTTA 43.6 0.0436 P10.5 crx- retina CAAAATTTCA (2) GAAACAAGGG GTACAAAAAT TATTTCAATT TTTAGATGTT TTTTCATTTA 29.9 0.0299 P10.5 crx+ retina CAAAATTTCA (2) CCTGTAATCT (2) CTCAGAAAGC (2) TAATGTTTTC (2) TATTTCAATT TTTAGATGTT 23 0.023 Adult retinal CAAAATTTCA (2) CTCAGAAAGC (2) CTCAGTCTGA CTGGGGGGGG GTACAAAAAT TTTAGATGTT 18.7 0.0187 ONL ATTCCGAATT (2) TTTAGATGTT 7.6 0.0076