Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.272475	Spg21	spastic paraplegia 21 homolog (human)	9	9 40.0 cM	27965
Gene Ontology	catalytic activity | hydrolase activity
Human Homolog	SPG21[spastic paraplegia 21 (autosomal recessive, Mast syndrome)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGCGTTCTC (2) 6.5 0.0065 P8 Cb GC GTGGACAGGC (6) 3.3 0.0033 P8 Cb GC TCCCCCCCCC (8) 3.3 0.0033 P8 Cb GC TTTTAAATTT (9) 3.3 0.0033 P8 Cb GC ACAGGCGTCA 1.6 0.0016 P8 Cb GC TTTGGTTGAA (3) 1.6 0.0016 Cb medulloblastoma ATGGTGACGG (2) 4.6 0.0046 Cb medulloblastoma CTTTAGAAAA (4) 2.3 0.0023 P8 GC+1d culture GTGGACAGGC (6) 5.7 0.0057 P8 GC+1d culture TGGCGTTCTC (2) 5.7 0.0057 P8 GC+1d culture TCCCCCCCCC (8) 3.4 0.0034 P8 GC+1d culture TTTTAAATTT (9) 2.3 0.0023 P8 GC+1d culture AATTTCATAA (2) 1.1 0.0011 P8 GC+1d culture ACAGGCTTCA (2) 1.1 0.0011 P8 GC+1d culture CTTTAGAAAA (4) 1.1 0.0011 P8 GC+SHH+1d culture TGGCGTTCTC (2) 8.2 0.0082 P8 GC+SHH+1d culture GTGGACAGGC (6) 3.5 0.0035 P8 GC+SHH+1d culture ACAGGCGTCA 1.2 0.0012 P8 GC+SHH+1d culture ACAGGCTTCA (2) 1.2 0.0012 P8 GC+SHH+1d culture TTTGGTTGAA (3) 1.2 0.0012 3T3 fibroblasts GTGGACAGGC (6) 21 0.021 3T3 fibroblasts TGGCGTTCTC (2) 7 0.007 E15 cortex TGGCGTTCTC (2) 4.9 0.0049 E15 cortex TTTTAAATTT (9) 4.9 0.0049 P1 cortex GTGGACAGGC (6) 4.5 0.0045 Hypothalamus GTGGACAGGC (6) 5.4 0.0054 Hypothalamus AATTTCATAA (2) 1.8 0.0018 Hypothalamus TGGCGTTCTC (2) 1.8 0.0018 E12.5 retina TGGCGTTCTC (2) 5.6 0.0056 E12.5 retina GTGGACAGGC (6) 3.8 0.0038 E12.5 retina TTTTAAATTT (9) 3.8 0.0038 E14.5 retina TTTTAAATTT (9) 5.5 0.0055 E14.5 retina TGGCGTTCTC (2) 1.8 0.0018 E16.5 retina GTGGACAGGC (6) 5.4 0.0054 E16.5 retina ATGGTGACGG (2) 1.8 0.0018 E18.5 retina GTGGACAGGC (6) 10.9 0.0109 E18.5 retina TGGCGTTCTC (2) 3.6 0.0036 E18.5 retina ACAGGCGTCA 1.8 0.0018 E18.5 retina TCCCCCCCCC (8) 1.8 0.0018 P0.5 retina GTGGACAGGC (6) 9.8 0.0098 P0.5 retina TGGCGTTCTC (2) 7.9 0.0079 P0.5 retina ACAGGCTTCA (2) 3.9 0.0039 P0.5 retina ATGGTGACGG (2) 3.9 0.0039 P0.5 retina ACAGGCGTCA 2 0.002 P2.5 retina GTGGACAGGC (6) 5.3 0.0053 P2.5 retina TGGCGTTCTC (2) 5.3 0.0053 P2.5 retina AATTTCATAA (2) 1.8 0.0018 P2.5 retina TTTTAAATTT (9) 1.8 0.0018 P4.5 retina TGGCGTTCTC (2) 4 0.004 P4.5 retina ACAGGCTTCA (2) 2 0.002 P4.5 retina GTGGACAGGC (6) 2 0.002 P6.5 retina TGGCGTTCTC (2) 3.3 0.0033 P6.5 retina GTGGACAGGC (6) 1.7 0.0017 P10.5 crx- retina GTGGACAGGC (6) 3.7 0.0037 P10.5 crx- retina ATGGTGACGG (2) 1.9 0.0019 P10.5 crx- retina CTTTAGAAAA (4) 1.9 0.0019 P10.5 crx- retina TGGCGTTCTC (2) 1.9 0.0019 P10.5 crx- retina TTTTAAATTT (9) 1.9 0.0019 P10.5 crx+ retina ACAGGCGTCA 3.8 0.0038 P10.5 crx+ retina CTTTAGAAAA (4) 3.8 0.0038 P10.5 crx+ retina GTGGACAGGC (6) 1.9 0.0019 Adult retinal TGGCGTTCTC (2) 3.7 0.0037 Adult retinal ACAGGCGTCA 1.9 0.0019 Adult retinal GTGGACAGGC (6) 1.9 0.0019 Adult retinal TTTGGTTGAA (3) 1.9 0.0019 ONL CTTTAGAAAA (4) 1.9 0.0019 ONL TTTTAAATTT (9) 1.9 0.0019