Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.272475	Spg21	spastic paraplegia 21 homolog (human)	9	9 40.0 cM	27965
Gene Ontology	catalytic activity | hydrolase activity
Human Homolog	SPG21[spastic paraplegia 21 (autosomal recessive, Mast syndrome)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 67 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ACAGGCGTCA GTGGACAGGC (3) TCCCCCCCCC (2) TGGCGTTCTC TTTGGTTGAA TTTTAAATTT (3) 19.6 0.0196 Cb medulloblastoma ATGGTGACGG CTTTAGAAAA 6.9 0.0069 P8 GC+1d culture AATTTCATAA ACAGGCTTCA CTTTAGAAAA GTGGACAGGC (3) TCCCCCCCCC (2) TGGCGTTCTC TTTTAAATTT (3) 20.4 0.0204 P8 GC+SHH+1d culture ACAGGCGTCA ACAGGCTTCA GTGGACAGGC (3) TGGCGTTCTC TTTGGTTGAA 15.3 0.0153 3T3 fibroblasts GTGGACAGGC (3) TGGCGTTCTC 28 0.028 E15 cortex TGGCGTTCTC TTTTAAATTT (3) 9.8 0.0098 P1 cortex GTGGACAGGC (3) 4.5 0.0045 Hypothalamus AATTTCATAA GTGGACAGGC (3) TGGCGTTCTC 9 0.009 E12.5 retina GTGGACAGGC (3) TGGCGTTCTC TTTTAAATTT (3) 13.2 0.0132 E14.5 retina TGGCGTTCTC TTTTAAATTT (3) 7.3 0.0073 E16.5 retina ATGGTGACGG GTGGACAGGC (3) 7.2 0.0072 E18.5 retina ACAGGCGTCA GTGGACAGGC (3) TCCCCCCCCC (2) TGGCGTTCTC 18.1 0.0181 P0.5 retina ACAGGCGTCA ACAGGCTTCA ATGGTGACGG GTGGACAGGC (3) TGGCGTTCTC 27.5 0.0275 P2.5 retina AATTTCATAA GTGGACAGGC (3) TGGCGTTCTC TTTTAAATTT (3) 14.2 0.0142 P4.5 retina ACAGGCTTCA GTGGACAGGC (3) TGGCGTTCTC 8 0.008 P6.5 retina GTGGACAGGC (3) TGGCGTTCTC 5 0.005 P10.5 crx- retina ATGGTGACGG CTTTAGAAAA GTGGACAGGC (3) TGGCGTTCTC TTTTAAATTT (3) 11.3 0.0113 P10.5 crx+ retina ACAGGCGTCA CTTTAGAAAA GTGGACAGGC (3) 9.5 0.0095 Adult retinal ACAGGCGTCA GTGGACAGGC (3) TGGCGTTCTC TTTGGTTGAA 9.4 0.0094 ONL CTTTAGAAAA TTTTAAATTT (3) 3.8 0.0038