Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.274425	Tia1	cytotoxic granule-associated RNA binding protein 1	6	6 D2	21841
Gene Ontology	apoptosis | cytoplasm | nucleus | RNA binding
Human Homolog	TIA1[TIA1 cytotoxic granule-associated RNA binding protein]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 6 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 232 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCTTCTTCT (13) 63.6 0.0636 P8 Cb GC ATAAAAAAAA (33) 11.4 0.0114 P8 Cb GC GAGCCAGTAT 11.4 0.0114 P8 Cb GC TCTCAAAAAA (22) 4.9 0.0049 P8 Cb GC ATGAAAAAAA (14) 3.3 0.0033 P8 Cb GC GCTGCTGCGG (3) 3.3 0.0033 P8 Cb GC TAATATAGAT 3.3 0.0033 P8 Cb GC TGGTGGAATG (4) 3.3 0.0033 P8 Cb GC ATTAAAAAAA (10) 1.6 0.0016 P8 Cb GC GAAATGATCT (3) 1.6 0.0016 P8 Cb GC GAAGCCAGAA (5) 1.6 0.0016 P8 Cb GC TACCAGGAAC (2) 1.6 0.0016 P8 Cb GC TTGATTTGCT (2) 1.6 0.0016 Cb medulloblastoma CCCTTCTTCT (13) 80.9 0.0809 Cb medulloblastoma ATAAAAAAAA (33) 25.4 0.0254 Cb medulloblastoma ATGAAAAAAA (14) 11.6 0.0116 Cb medulloblastoma TCTCAAAAAA (22) 9.2 0.0092 Cb medulloblastoma ATCAAAAAAA (16) 6.9 0.0069 Cb medulloblastoma AAGAAGAAAA (14) 2.3 0.0023 Cb medulloblastoma GAAGCCAGAA (5) 2.3 0.0023 Cb medulloblastoma GAGCCAGTAT 2.3 0.0023 Cb medulloblastoma GCCACGTATA (2) 2.3 0.0023 Cb medulloblastoma GCTTTGGTCT 2.3 0.0023 Cb medulloblastoma GCTTTTGGTC (2) 2.3 0.0023 Cb medulloblastoma TGGTGGAATG (4) 2.3 0.0023 P8 GC+1d culture CCCTTCTTCT (13) 12.6 0.0126 P8 GC+1d culture GAGCCAGTAT 9.1 0.0091 P8 GC+1d culture ATAAAAAAAA (33) 5.7 0.0057 P8 GC+1d culture ATGAAAAAAA (14) 5.7 0.0057 P8 GC+1d culture ATCAAAAAAA (16) 4.6 0.0046 P8 GC+1d culture GCCACGTATA (2) 3.4 0.0034 P8 GC+1d culture TCTCAAAAAA (22) 3.4 0.0034 P8 GC+1d culture ATTAAAAAAA (10) 2.3 0.0023 P8 GC+1d culture AAGAAGAAAA (14) 1.1 0.0011 P8 GC+1d culture AATTTTAAGA 1.1 0.0011 P8 GC+1d culture GAAGCCAGAA (5) 1.1 0.0011 P8 GC+1d culture GCTTTGGTCT 1.1 0.0011 P8 GC+1d culture GCTTTTGGTC (2) 1.1 0.0011 P8 GC+1d culture TAATATAGAT 1.1 0.0011 P8 GC+1d culture TGAATATCAC (2) 1.1 0.0011 P8 GC+1d culture TGGTGGAATG (4) 1.1 0.0011 P8 GC+SHH+1d culture ATAAAAAAAA (33) 21.1 0.0211 P8 GC+SHH+1d culture CCCTTCTTCT (13) 12.9 0.0129 P8 GC+SHH+1d culture ATTAAAAAAA (10) 4.7 0.0047 P8 GC+SHH+1d culture GAGCCAGTAT 4.7 0.0047 P8 GC+SHH+1d culture ATCAAAAAAA (16) 3.5 0.0035 P8 GC+SHH+1d culture ATGAAAAAAA (14) 3.5 0.0035 P8 GC+SHH+1d culture TCTCAAAAAA (22) 3.5 0.0035 P8 GC+SHH+1d culture GCCACGTATA (2) 2.3 0.0023 P8 GC+SHH+1d culture GCTGCTGCGG (3) 2.3 0.0023 P8 GC+SHH+1d culture GCTTTTGGTC (2) 2.3 0.0023 P8 GC+SHH+1d culture TAATATAGAT 2.3 0.0023 P8 GC+SHH+1d culture TGTTTGTTGG (3) 2.3 0.0023 P8 GC+SHH+1d culture GCTTTGGTCT 1.2 0.0012 P8 GC+SHH+1d culture TACCAGGAAC (2) 1.2 0.0012 P8 GC+SHH+1d culture TTGATTTGCT (2) 1.2 0.0012 3T3 fibroblasts TGGTGGAATG (4) 10.5 0.0105 3T3 fibroblasts GCTGCTGCGG (3) 7 0.007 3T3 fibroblasts ATTAAAAAAA (10) 3.5 0.0035 3T3 fibroblasts GAGCCAGTAT 3.5 0.0035 E15 cortex CCCTTCTTCT (13) 158.3 0.1583 E15 cortex TGGTGGAATG (4) 14.8 0.0148 E15 cortex GAGCCAGTAT 9.9 0.0099 P1 cortex ATCAAAAAAA (16) 9.1 0.0091 P1 cortex TGGTGGAATG (4) 9.1 0.0091 P1 cortex CCCTTCTTCT (13) 4.5 0.0045 P1 cortex GCCACGTATA (2) 4.5 0.0045 P1 cortex GCTTTGGTCT 4.5 0.0045 P1 cortex TGGAGGGACG (2) 4.5 0.0045 Hypothalamus CCCTTCTTCT (13) 21.7 0.0217 Hypothalamus GAGCCAGTAT 18.1 0.0181 Hypothalamus ATAAAAAAAA (33) 7.2 0.0072 Hypothalamus ATCAAAAAAA (16) 7.2 0.0072 Hypothalamus TCTCAAAAAA (22) 5.4 0.0054 Hypothalamus ATTAAAAAAA (10) 3.6 0.0036 Hypothalamus ATGAAAAAAA (14) 1.8 0.0018 Hypothalamus CAAAATGCTG (4) 1.8 0.0018 Hypothalamus GAAGCCAGAA (5) 1.8 0.0018 Hypothalamus TGGTGGAATG (4) 1.8 0.0018 Hypothalamus TTGATTTGCT (2) 1.8 0.0018 E12.5 retina CCCTTCTTCT (13) 50.7 0.0507 E12.5 retina ATAAAAAAAA (33) 11.3 0.0113 E12.5 retina GAGCCAGTAT 11.3 0.0113 E12.5 retina GCCACGTATA (2) 7.5 0.0075 E12.5 retina TAATATAGAT 7.5 0.0075 E12.5 retina ATCAAAAAAA (16) 3.8 0.0038 E12.5 retina ATGAAAAAAA (14) 1.9 0.0019 E12.5 retina ATTAAAAAAA (10) 1.9 0.0019 E12.5 retina GAGCCAGCAG (6) 1.9 0.0019 E12.5 retina GCTTTGGTCT 1.9 0.0019 E12.5 retina TGGTGGAATG (4) 1.9 0.0019 E14.5 retina CCCTTCTTCT (13) 43.7 0.0437 E14.5 retina ATAAAAAAAA (33) 16.4 0.0164 E14.5 retina ATTAAAAAAA (10) 10.9 0.0109 E14.5 retina GAGCCAGTAT 9.1 0.0091 E14.5 retina GCCACGTATA (2) 9.1 0.0091 E14.5 retina GAAAAAGAGA (6) 7.3 0.0073 E14.5 retina ATGAAAAAAA (14) 3.6 0.0036 E14.5 retina TAATATAGAT 3.6 0.0036 E14.5 retina TACCAGGAAC (2) 3.6 0.0036 E14.5 retina TCTCAAAAAA (22) 3.6 0.0036 E14.5 retina AATTTTAGGA 1.8 0.0018 E14.5 retina ATCAAAAAAA (16) 1.8 0.0018 E14.5 retina GAGCCAGCAG (6) 1.8 0.0018 E14.5 retina GCTGCTGCGG (3) 1.8 0.0018 E14.5 retina TGGAGGGACG (2) 1.8 0.0018 E16.5 retina CCCTTCTTCT (13) 18.1 0.0181 E16.5 retina GAGCCAGTAT 18.1 0.0181 E16.5 retina GCCACGTATA (2) 7.2 0.0072 E16.5 retina ATAAAAAAAA (33) 5.4 0.0054 E16.5 retina ATCAAAAAAA (16) 5.4 0.0054 E16.5 retina TACCAGGAAC (2) 5.4 0.0054 E16.5 retina ATGAAAAAAA (14) 3.6 0.0036 E16.5 retina ATTAAAAAAA (10) 3.6 0.0036 E16.5 retina TCTCAAAAAA (22) 3.6 0.0036 E16.5 retina AAAAAGTTTT (2) 1.8 0.0018 E16.5 retina AAGAAGAAAA (14) 1.8 0.0018 E16.5 retina GAAATGATCT (3) 1.8 0.0018 E16.5 retina TAATATAGAT 1.8 0.0018 E16.5 retina TGGAGGGACG (2) 1.8 0.0018 E18.5 retina ATAAAAAAAA (33) 30.9 0.0309 E18.5 retina GAGCCAGTAT 27.3 0.0273 E18.5 retina ATTAAAAAAA (10) 9.1 0.0091 E18.5 retina GCCACGTATA (2) 7.3 0.0073 E18.5 retina ATCAAAAAAA (16) 5.5 0.0055 E18.5 retina ATGAAAAAAA (14) 5.5 0.0055 E18.5 retina CCCTTCTTCT (13) 5.5 0.0055 E18.5 retina TAATATAGAT 5.5 0.0055 E18.5 retina TCTCAAAAAA (22) 5.5 0.0055 E18.5 retina TGGTGGAATG (4) 3.6 0.0036 E18.5 retina AAAAAGTTTT (2) 1.8 0.0018 E18.5 retina GCTGCTGCGG (3) 1.8 0.0018 E18.5 retina GCTTTGGTCT 1.8 0.0018 E18.5 retina GTATGATGCA (5) 1.8 0.0018 E18.5 retina TGAATATCAC (2) 1.8 0.0018 E18.5 retina TTGATTTGCT (2) 1.8 0.0018 P0.5 retina CCCTTCTTCT (13) 11.8 0.0118 P0.5 retina GAGCCAGTAT 11.8 0.0118 P0.5 retina GCTTTGGTCT 7.9 0.0079 P0.5 retina ATCAAAAAAA (16) 5.9 0.0059 P0.5 retina ATGAAAAAAA (14) 3.9 0.0039 P0.5 retina GAGCCAGCAG (6) 3.9 0.0039 P0.5 retina TGGTGGAATG (4) 3.9 0.0039 P0.5 retina ATAAAAAAAA (33) 2 0.002 P0.5 retina GCCACGTATA (2) 2 0.002 P0.5 retina GCTTTTGGTC (2) 2 0.002 P2.5 retina GAGCCAGTAT 37 0.037 P2.5 retina GCCACGTATA (2) 17.6 0.0176 P2.5 retina CCCTTCTTCT (13) 15.8 0.0158 P2.5 retina ATAAAAAAAA (33) 14.1 0.0141 P2.5 retina ATGAAAAAAA (14) 3.5 0.0035 P2.5 retina CAAAATGCTG (4) 3.5 0.0035 P2.5 retina ATCAAAAAAA (16) 1.8 0.0018 P2.5 retina ATTAAAAAAA (10) 1.8 0.0018 P2.5 retina GAAATGATCT (3) 1.8 0.0018 P2.5 retina GCTTTGGTCT 1.8 0.0018 P2.5 retina TAATATAGAT 1.8 0.0018 P2.5 retina TCTCAAAAAA (22) 1.8 0.0018 P4.5 retina GAGCCAGTAT 23.8 0.0238 P4.5 retina ATAAAAAAAA (33) 21.8 0.0218 P4.5 retina GCCACGTATA (2) 17.8 0.0178 P4.5 retina CCCTTCTTCT (13) 11.9 0.0119 P4.5 retina TGGTGGAATG (4) 7.9 0.0079 P4.5 retina ATGAAAAAAA (14) 4 0.004 P4.5 retina GAAATGATCT (3) 4 0.004 P4.5 retina TAATATAGAT 4 0.004 P4.5 retina AATTTTAAGA 2 0.002 P4.5 retina ATCAAAAAAA (16) 2 0.002 P4.5 retina ATTAAAAAAA (10) 2 0.002 P4.5 retina CTTGCGTCCT (3) 2 0.002 P4.5 retina GCTGCTGCGG (3) 2 0.002 P4.5 retina GTATGATGCA (5) 2 0.002 P4.5 retina TCTCAAAAAA (22) 2 0.002 P6.5 retina GAGCCAGTAT 15 0.015 P6.5 retina GCCACGTATA (2) 15 0.015 P6.5 retina ATAAAAAAAA (33) 10 0.01 P6.5 retina GCTTTGGTCT 8.3 0.0083 P6.5 retina ATCAAAAAAA (16) 5 0.005 P6.5 retina CCCTTCTTCT (13) 3.3 0.0033 P6.5 retina TAATATAGAT 3.3 0.0033 P6.5 retina TCTCAAAAAA (22) 3.3 0.0033 P6.5 retina TGGAGGGACG (2) 3.3 0.0033 P6.5 retina ATGAAAAAAA (14) 1.7 0.0017 P6.5 retina GCTGCTGCGG (3) 1.7 0.0017 P10.5 crx- retina GAGCCAGTAT 16.7 0.0167 P10.5 crx- retina GCCACGTATA (2) 11.1 0.0111 P10.5 crx- retina ATAAAAAAAA (33) 5.6 0.0056 P10.5 crx- retina GCTTTGGTCT 5.6 0.0056 P10.5 crx- retina CTTGCGTCCT (3) 3.7 0.0037 P10.5 crx- retina AAGAAGAAAA (14) 1.9 0.0019 P10.5 crx- retina AATTTTAAGA 1.9 0.0019 P10.5 crx- retina AATTTTAGGA 1.9 0.0019 P10.5 crx- retina ATCAAAAAAA (16) 1.9 0.0019 P10.5 crx- retina ATGAAAAAAA (14) 1.9 0.0019 P10.5 crx- retina ATTAAAAAAA (10) 1.9 0.0019 P10.5 crx+ retina GAGCCAGTAT 23.1 0.0231 P10.5 crx+ retina CCCTTCTTCT (13) 19.2 0.0192 P10.5 crx+ retina ATCAAAAAAA (16) 13.5 0.0135 P10.5 crx+ retina GCCACGTATA (2) 11.5 0.0115 P10.5 crx+ retina ATAAAAAAAA (33) 3.8 0.0038 P10.5 crx+ retina GAAGCCAGAA (5) 3.8 0.0038 P10.5 crx+ retina GCTGCTGCGG (3) 3.8 0.0038 P10.5 crx+ retina GCTTTGGTCT 3.8 0.0038 P10.5 crx+ retina TCTCAAAAAA (22) 3.8 0.0038 P10.5 crx+ retina AAAAAGTTTT (2) 1.9 0.0019 P10.5 crx+ retina ATGAAAAAAA (14) 1.9 0.0019 P10.5 crx+ retina GCTTTTGGTC (2) 1.9 0.0019 P10.5 crx+ retina TGGTGGAATG (4) 1.9 0.0019 P10.5 crx+ retina TGTTTGTTGG (3) 1.9 0.0019 Adult retinal GAGCCAGTAT 7.4 0.0074 Adult retinal TCTCAAAAAA (22) 7.4 0.0074 Adult retinal CCCTTCTTCT (13) 5.6 0.0056 Adult retinal GCCACGTATA (2) 3.7 0.0037 Adult retinal ATCAAAAAAA (16) 1.9 0.0019 Adult retinal GAGCCAGCAG (6) 1.9 0.0019 Adult retinal GCTTTGGTCT 1.9 0.0019 Adult retinal GTATGATGCA (5) 1.9 0.0019 Adult retinal TACCAGGAAC (2) 1.9 0.0019 Adult retinal TGTTTGTTGG (3) 1.9 0.0019 ONL TCTCAAAAAA (22) 7.7 0.0077 ONL GAGCCAGTAT 5.7 0.0057 ONL GCCACGTATA (2) 5.7 0.0057 ONL GAAAAAGAGA (6) 3.8 0.0038 ONL AAAAAGTTTT (2) 1.9 0.0019 ONL AAGAAGAAAA (14) 1.9 0.0019 ONL AATTTTAGGA 1.9 0.0019 ONL ATAAAAAAAA (33) 1.9 0.0019 ONL CTTGCGTCCT (3) 1.9 0.0019 ONL GCTTTGGTCT 1.9 0.0019 ONL TAATATAGAT 1.9 0.0019 ONL TACCAGGAAC (2) 1.9 0.0019 ONL TGAATATCAC (2) 1.9 0.0019