Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.276137	Atp5a1	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1	18	18 50.0 cM	11946
Gene Ontology	ATP binding | ATP biosynthesis | ATP synthesis coupled proton transport | extracellular space | hydrogen ion transporter activity | hydrogen-exporting ATPase activity, phosphorylative mechanism | hydrogen-transporting ATP synthase activity, rotational mechanism | hydrogen-transporting ATPase activity, rotational mechanism | hydrolase activity | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | mitochondrion | proton transport | proton-transporting ATP synthase complex (sensu Eukarya) | proton-transporting two-sector ATPase complex
Human Homolog	ATP5A1[ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle] | ATP5A1[ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 117 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AATAAAAGTT (2) 26.1 0.0261 P8 Cb GC GATAGATAAT 21.2 0.0212 P8 Cb GC AATAAAAGCT (2) 3.3 0.0033 P8 Cb GC AATTAAAGTT (2) 3.3 0.0033 P8 Cb GC CCTCTAACAC 3.3 0.0033 P8 Cb GC GCTATTGAAG 3.3 0.0033 P8 Cb GC ATCTCCCAGG 1.6 0.0016 P8 Cb GC GGCTGAGGAA (2) 1.6 0.0016 Cb medulloblastoma AATAAAAGTT (2) 53.2 0.0532 Cb medulloblastoma GATAGATAAT 41.6 0.0416 Cb medulloblastoma TGATTTCTGT 4.6 0.0046 Cb medulloblastoma AATAAAAGTC 2.3 0.0023 Cb medulloblastoma GAGATTTCTT 2.3 0.0023 P8 GC+1d culture GATAGATAAT 21.7 0.0217 P8 GC+1d culture AATAAAAGTT (2) 19.4 0.0194 P8 GC+1d culture AATTAAAGTT (2) 2.3 0.0023 P8 GC+1d culture CGGGATGCCC 2.3 0.0023 P8 GC+1d culture AATAAAAGCT (2) 1.1 0.0011 P8 GC+1d culture GCTATTGAAG 1.1 0.0011 P8 GC+1d culture TTGAGTTCCA 1.1 0.0011 P8 GC+SHH+1d culture GATAGATAAT 26.9 0.0269 P8 GC+SHH+1d culture AATAAAAGTT (2) 25.8 0.0258 P8 GC+SHH+1d culture AATTAAAGTT (2) 5.9 0.0059 P8 GC+SHH+1d culture GCTATTGAAG 2.3 0.0023 P8 GC+SHH+1d culture TGATTTCTGT 2.3 0.0023 P8 GC+SHH+1d culture GAGATTTCTT 1.2 0.0012 3T3 fibroblasts GATAGATAAT 3.5 0.0035 E15 cortex AATAAAAGTT (2) 9.9 0.0099 E15 cortex GATAGATAAT 4.9 0.0049 P1 cortex AATAAAAGTT (2) 9.1 0.0091 P1 cortex ACCCAACATC 9.1 0.0091 P1 cortex ATCTCCCAGG 9.1 0.0091 P1 cortex GATAGATAAT 9.1 0.0091 P1 cortex AATTAAAGTT (2) 4.5 0.0045 P1 cortex CGGGATGCCC 4.5 0.0045 P1 cortex GCCCCCCCGC 4.5 0.0045 Hypothalamus AATAAAAGTT (2) 21.7 0.0217 Hypothalamus GATAGATAAT 19.9 0.0199 Hypothalamus AATAAAAGTC 1.8 0.0018 Hypothalamus ATCTCCCAGG 1.8 0.0018 Hypothalamus GGAGAGTACT 1.8 0.0018 Hypothalamus TGATTTCTGT 1.8 0.0018 E12.5 retina AATAAAAGTT (2) 24.4 0.0244 E12.5 retina GATAGATAAT 20.7 0.0207 E12.5 retina AAGTCGTGCT 1.9 0.0019 E12.5 retina GAGATTTCTT 1.9 0.0019 E12.5 retina GCTATTGAAG 1.9 0.0019 E14.5 retina AATAAAAGTT (2) 18.2 0.0182 E14.5 retina GATAGATAAT 12.8 0.0128 E14.5 retina AATTAAAGTT (2) 3.6 0.0036 E14.5 retina GGAGAGTACT 3.6 0.0036 E14.5 retina TGATTTCTGT 3.6 0.0036 E14.5 retina AAGTCGTGCT 1.8 0.0018 E14.5 retina GCCCCCCCGC 1.8 0.0018 E14.5 retina GGCTGAGGAA (2) 1.8 0.0018 E16.5 retina GATAGATAAT 27.2 0.0272 E16.5 retina AATAAAAGTT (2) 25.4 0.0254 E16.5 retina TTGAGTTCCA 5.4 0.0054 E16.5 retina AATTAAAGTT (2) 3.6 0.0036 E16.5 retina TGATTTCTGT 3.6 0.0036 E16.5 retina AAGTCGTGCT 1.8 0.0018 E16.5 retina ACCCAACATC 1.8 0.0018 E16.5 retina ATTGCCCTTG 1.8 0.0018 E16.5 retina GGAGAGTACT 1.8 0.0018 E16.5 retina GGCTGAGGAA (2) 1.8 0.0018 E18.5 retina AATAAAAGTT (2) 29.1 0.0291 E18.5 retina GATAGATAAT 29.1 0.0291 E18.5 retina AATTAAAGTT (2) 3.6 0.0036 E18.5 retina GGAGAGTACT 3.6 0.0036 E18.5 retina CCTCTAACAC 1.8 0.0018 E18.5 retina GCCCCCCCGC 1.8 0.0018 E18.5 retina TGATTTCTGT 1.8 0.0018 P0.5 retina AATAAAAGTT (2) 11.8 0.0118 P0.5 retina GGAGAGTACT 5.9 0.0059 P0.5 retina GATAGATAAT 3.9 0.0039 P0.5 retina TGATTTCTGT 3.9 0.0039 P0.5 retina ATCTCCCAGG 2 0.002 P0.5 retina GAGATTTCTT 2 0.002 P2.5 retina AATAAAAGTT (2) 17.6 0.0176 P2.5 retina GATAGATAAT 17.6 0.0176 P2.5 retina AATTAAAGTT (2) 3.5 0.0035 P2.5 retina AAGTCGTGCT 1.8 0.0018 P2.5 retina GCTATTGAAG 1.8 0.0018 P4.5 retina AATAAAAGTT (2) 35.7 0.0357 P4.5 retina GATAGATAAT 13.9 0.0139 P4.5 retina AATTAAAGTT (2) 2 0.002 P4.5 retina ATTGCCCTTG 2 0.002 P4.5 retina CCTCTAACAC 2 0.002 P4.5 retina GCTATTGAAG 2 0.002 P4.5 retina TTGAGTTCCA 2 0.002 P6.5 retina AATAAAAGTT (2) 23.3 0.0233 P6.5 retina GATAGATAAT 18.3 0.0183 P6.5 retina AAGTCGTGCT 3.3 0.0033 P6.5 retina AATTAAAGTT (2) 3.3 0.0033 P6.5 retina ATCTCCCAGG 3.3 0.0033 P10.5 crx- retina AATAAAAGTT (2) 37.2 0.0372 P10.5 crx- retina GATAGATAAT 13 0.013 P10.5 crx- retina AATTAAAGTT (2) 9.3 0.0093 P10.5 crx- retina AATAAAAGTC 1.9 0.0019 P10.5 crx- retina ATCTCCCAGG 1.9 0.0019 P10.5 crx+ retina AATAAAAGTT (2) 40.4 0.0404 P10.5 crx+ retina GATAGATAAT 9.6 0.0096 P10.5 crx+ retina AAGTCGTGCT 1.9 0.0019 P10.5 crx+ retina GGCTGAGGAA (2) 1.9 0.0019 P10.5 crx+ retina TGATTTCTGT 1.9 0.0019 Adult retinal GATAGATAAT 11.1 0.0111 Adult retinal AATAAAAGTT (2) 9.3 0.0093 Adult retinal ATCTCCCAGG 1.9 0.0019 Adult retinal TGATTTCTGT 1.9 0.0019 ONL GATAGATAAT 24.9 0.0249 ONL AATAAAAGTT (2) 15.3 0.0153 ONL AATTAAAGTT (2) 7.7 0.0077 ONL TTGAGTTCCA 3.8 0.0038 ONL AATAAAAGCT (2) 1.9 0.0019 ONL ATTGCCCTTG 1.9 0.0019 ONL GCTATTGAAG 1.9 0.0019 ONL TGATTTCTGT 1.9 0.0019