Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.276856	Rpl11	ribosomal protein L11	4		67025
Gene Ontology	cytosolic large ribosomal subunit (sensu Eukarya) | intracellular | protein biosynthesis | ribonucleoprotein complex | ribosome | RNA binding | rRNA binding | structural constituent of ribosome
Human Homolog	RPL11[ribosomal protein L11]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 163 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CGCTGGTTCC (6) 169.7 0.1697 P8 Cb GC CCCTTCTTCT (13) 63.6 0.0636 P8 Cb GC TTAAAAAAAA (80) 13.1 0.0131 P8 Cb GC ATGATAATGG (16) 4.9 0.0049 P8 Cb GC GCCTCCTCCT (6) 3.3 0.0033 P8 Cb GC TGTGTGCCTG (6) 3.3 0.0033 P8 Cb GC CACTGGTTCC (8) 1.6 0.0016 P8 Cb GC CGGGAACTGC (4) 1.6 0.0016 Cb medulloblastoma CCCTTCTTCT (13) 80.9 0.0809 Cb medulloblastoma CGCTGGTTCC (6) 55.5 0.0555 Cb medulloblastoma TTAAAAAAAA (80) 53.2 0.0532 Cb medulloblastoma CGCTGGTTTC (2) 2.3 0.0023 Cb medulloblastoma GGAGGTAGAG 2.3 0.0023 Cb medulloblastoma GGGGAACTGC (3) 2.3 0.0023 P8 GC+1d culture CGCTGGTTCC (6) 157.5 0.1575 P8 GC+1d culture TTAAAAAAAA (80) 28.5 0.0285 P8 GC+1d culture CCCTTCTTCT (13) 12.6 0.0126 P8 GC+1d culture GCCTCCTCCT (6) 5.7 0.0057 P8 GC+1d culture ATGATAATGG (16) 3.4 0.0034 P8 GC+1d culture GCCTCCTCTT (5) 2.3 0.0023 P8 GC+1d culture ATGCACTTTT (3) 1.1 0.0011 P8 GC+SHH+1d culture CGCTGGTTCC (6) 179.1 0.1791 P8 GC+SHH+1d culture TTAAAAAAAA (80) 34 0.034 P8 GC+SHH+1d culture CCCTTCTTCT (13) 12.9 0.0129 P8 GC+SHH+1d culture ATGATAATGG (16) 3.5 0.0035 P8 GC+SHH+1d culture GCCTCCTCCT (6) 1.2 0.0012 3T3 fibroblasts CGCTGGTTCC (6) 112.2 0.1122 3T3 fibroblasts GCCTCCTCCT (6) 7 0.007 3T3 fibroblasts TGGTGCTGGG (6) 3.5 0.0035 3T3 fibroblasts TGTGTGCCTG (6) 3.5 0.0035 E15 cortex CCCTTCTTCT (13) 158.3 0.1583 E15 cortex CGCTGGTTCC (6) 143.5 0.1435 E15 cortex CGCTGGGTCC 9.9 0.0099 E15 cortex ATGATAATGG (16) 4.9 0.0049 E15 cortex CGGGAACTGC (4) 4.9 0.0049 E15 cortex TTAAAAAAAA (80) 4.9 0.0049 P1 cortex CGCTGGTTCC (6) 18.2 0.0182 P1 cortex TTAAAAAAAA (80) 13.6 0.0136 P1 cortex ATGATAATGG (16) 9.1 0.0091 P1 cortex CCCTTCTTCT (13) 4.5 0.0045 Hypothalamus CGCTGGTTCC (6) 99.6 0.0996 Hypothalamus CCCTTCTTCT (13) 21.7 0.0217 Hypothalamus ATGATAATGG (16) 19.9 0.0199 Hypothalamus TTAAAAAAAA (80) 19.9 0.0199 Hypothalamus GCCTCCTCCT (6) 14.5 0.0145 Hypothalamus GCCTCCTCTT (5) 3.6 0.0036 Hypothalamus ATGCACTTTT (3) 1.8 0.0018 Hypothalamus CCCTGGTTCC (3) 1.8 0.0018 Hypothalamus CGCTGGGTCC 1.8 0.0018 Hypothalamus GGGGAACTGC (3) 1.8 0.0018 Hypothalamus TGCATACATA (14) 1.8 0.0018 E12.5 retina CGCTGGTTCC (6) 189.6 0.1896 E12.5 retina CCCTTCTTCT (13) 50.7 0.0507 E12.5 retina TTAAAAAAAA (80) 11.3 0.0113 E12.5 retina ATGATAATGG (16) 1.9 0.0019 E14.5 retina CGCTGGTTCC (6) 307.9 0.3079 E14.5 retina GCCTCCTCCT (6) 54.7 0.0547 E14.5 retina CCCTTCTTCT (13) 43.7 0.0437 E14.5 retina ATGATAATGG (16) 18.2 0.0182 E14.5 retina TTAAAAAAAA (80) 16.4 0.0164 E14.5 retina TGGTGCTGGG (6) 3.6 0.0036 E14.5 retina CACTGGTTCC (8) 1.8 0.0018 E14.5 retina CCCTGGTTCC (3) 1.8 0.0018 E14.5 retina CGCTGGGTCC 1.8 0.0018 E14.5 retina CGCTGGTTCA 1.8 0.0018 E14.5 retina CGCTGGTTTC (2) 1.8 0.0018 E14.5 retina CGGGAACTGC (4) 1.8 0.0018 E14.5 retina GCCTCCTCTT (5) 1.8 0.0018 E14.5 retina GGAGGTAGAG 1.8 0.0018 E16.5 retina CGCTGGTTCC (6) 376.7 0.3767 E16.5 retina GCCTCCTCCT (6) 34.4 0.0344 E16.5 retina ATGATAATGG (16) 19.9 0.0199 E16.5 retina CCCTTCTTCT (13) 18.1 0.0181 E16.5 retina TTAAAAAAAA (80) 16.3 0.0163 E16.5 retina CCCTGGTTCC (3) 3.6 0.0036 E16.5 retina TGGTGCTGGG (6) 3.6 0.0036 E18.5 retina CGCTGGTTCC (6) 227.4 0.2274 E18.5 retina TTAAAAAAAA (80) 50.9 0.0509 E18.5 retina GCCTCCTCCT (6) 21.8 0.0218 E18.5 retina ATGATAATGG (16) 14.6 0.0146 E18.5 retina CCCTTCTTCT (13) 5.5 0.0055 E18.5 retina CCCTGGTTCC (3) 3.6 0.0036 E18.5 retina TGGTGCTGGG (6) 3.6 0.0036 E18.5 retina CGCTGGGTCC 1.8 0.0018 E18.5 retina GCCTCCTCTT (5) 1.8 0.0018 E18.5 retina TGCATACATA (14) 1.8 0.0018 P0.5 retina CGCTGGTTCC (6) 159 0.159 P0.5 retina TTAAAAAAAA (80) 17.7 0.0177 P0.5 retina CCCTTCTTCT (13) 11.8 0.0118 P0.5 retina ATGATAATGG (16) 7.9 0.0079 P0.5 retina CGCTGGGTCC 2 0.002 P0.5 retina CGCTGGTTCA 2 0.002 P0.5 retina CGTTGGTTCC 2 0.002 P0.5 retina GCCTCCTCCT (6) 2 0.002 P0.5 retina GCCTCCTCTT (5) 2 0.002 P0.5 retina TGCATACATA (14) 2 0.002 P0.5 retina TGTGTGCCTG (6) 2 0.002 P2.5 retina CGCTGGTTCC (6) 160.1 0.1601 P2.5 retina TTAAAAAAAA (80) 40.5 0.0405 P2.5 retina CCCTTCTTCT (13) 15.8 0.0158 P2.5 retina ATGATAATGG (16) 7 0.007 P2.5 retina GCCTCCTCCT (6) 7 0.007 P2.5 retina TGCATACATA (14) 3.5 0.0035 P2.5 retina ATGCACTTTT (3) 1.8 0.0018 P4.5 retina CGCTGGTTCC (6) 152.6 0.1526 P4.5 retina TTAAAAAAAA (80) 47.6 0.0476 P4.5 retina CCCTTCTTCT (13) 11.9 0.0119 P4.5 retina ATGATAATGG (16) 9.9 0.0099 P4.5 retina CCCTGGTTCC (3) 4 0.004 P4.5 retina GCCTCCTCCT (6) 4 0.004 P4.5 retina ATGCACTTTT (3) 2 0.002 P4.5 retina CGCTGGGTCC 2 0.002 P4.5 retina CGGGAACTGC (4) 2 0.002 P4.5 retina CGTTGGTTCC 2 0.002 P4.5 retina GGAGGTAGAG 2 0.002 P4.5 retina TGCATACATA (14) 2 0.002 P4.5 retina TGGTGCTGGG (6) 2 0.002 P6.5 retina CGCTGGTTCC (6) 100 0.1 P6.5 retina TTAAAAAAAA (80) 16.7 0.0167 P6.5 retina ATGATAATGG (16) 8.3 0.0083 P6.5 retina GCCTCCTCCT (6) 5 0.005 P6.5 retina CCCTTCTTCT (13) 3.3 0.0033 P6.5 retina GGAGGTAGAG 3.3 0.0033 P6.5 retina TGTGTGCCTG (6) 3.3 0.0033 P6.5 retina CGCTGGTTCA 1.7 0.0017 P6.5 retina TGCATACATA (14) 1.7 0.0017 P10.5 crx- retina CGCTGGTTCC (6) 351.1 0.3511 P10.5 crx- retina TTAAAAAAAA (80) 13 0.013 P10.5 crx- retina GCCTCCTCCT (6) 9.3 0.0093 P10.5 crx- retina GGGGAACTGC (3) 7.4 0.0074 P10.5 crx- retina CGGGAACTGC (4) 3.7 0.0037 P10.5 crx- retina ATGATAATGG (16) 1.9 0.0019 P10.5 crx- retina CACTGGTTCC (8) 1.9 0.0019 P10.5 crx- retina CGCTGGGTCC 1.9 0.0019 P10.5 crx- retina CGCTGGTTTC (2) 1.9 0.0019 P10.5 crx- retina CGTTGGTTCC 1.9 0.0019 P10.5 crx- retina GCCTCCTCTT (5) 1.9 0.0019 P10.5 crx- retina TGTGTGCCTG (6) 1.9 0.0019 P10.5 crx+ retina CGCTGGTTCC (6) 165.3 0.1653 P10.5 crx+ retina CCCTTCTTCT (13) 19.2 0.0192 P10.5 crx+ retina GCCTCCTCCT (6) 5.8 0.0058 P10.5 crx+ retina TTAAAAAAAA (80) 5.8 0.0058 P10.5 crx+ retina ATGATAATGG (16) 3.8 0.0038 P10.5 crx+ retina GCCTCCTCTT (5) 3.8 0.0038 P10.5 crx+ retina CCCTGGTTCC (3) 1.9 0.0019 P10.5 crx+ retina GGAGGTAGAG 1.9 0.0019 P10.5 crx+ retina TGCATACATA (14) 1.9 0.0019 P10.5 crx+ retina TGTGTGCCTG (6) 1.9 0.0019 Adult retinal CGCTGGTTCC (6) 40.7 0.0407 Adult retinal ATGATAATGG (16) 9.3 0.0093 Adult retinal TTAAAAAAAA (80) 7.4 0.0074 Adult retinal CCCTTCTTCT (13) 5.6 0.0056 Adult retinal ATGCACTTTT (3) 3.7 0.0037 Adult retinal GCCTCCTCTT (5) 3.7 0.0037 Adult retinal TGTGTGCCTG (6) 3.7 0.0037 Adult retinal GCCTCCTCCT (6) 1.9 0.0019 Adult retinal GGAGGTAGAG 1.9 0.0019 Adult retinal TGGTGCTGGG (6) 1.9 0.0019 ONL CGCTGGTTCC (6) 53.6 0.0536 ONL CGCTGGTTTC (2) 26.8 0.0268 ONL ATGATAATGG (16) 11.5 0.0115 ONL TTAAAAAAAA (80) 7.7 0.0077 ONL TGGTGCTGGG (6) 3.8 0.0038