Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277661	Lrpap1	low density lipoprotein receptor-related protein associated protein 1	5	5 20.0 cM	16976
Gene Ontology	endoplasmic reticulum | extracellular space | heparin binding | receptor activity
Human Homolog	LRPAP1[low density lipoprotein receptor-related protein associated protein 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 179 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCCACATCC (5) 42.4 0.0424 P8 Cb GC TGTACCTGTA 13.1 0.0131 P8 Cb GC GCAGAGTTTT (3) 4.9 0.0049 P8 Cb GC GGTTCACACA (2) 4.9 0.0049 P8 Cb GC TGTACTGGCA (4) 3.3 0.0033 P8 Cb GC AACCTGTTCT 1.6 0.0016 P8 Cb GC GCAGAGTTTG (3) 1.6 0.0016 Cb medulloblastoma GCAGAGTTTT (3) 34.7 0.0347 Cb medulloblastoma GGTTCACACA (2) 16.2 0.0162 Cb medulloblastoma GCAGAGTTTG (3) 6.9 0.0069 Cb medulloblastoma GAGAAGCCTG (8) 4.6 0.0046 Cb medulloblastoma GCCCACATCC (5) 4.6 0.0046 Cb medulloblastoma AACATACAAG (2) 2.3 0.0023 Cb medulloblastoma GAGAACCTGA (7) 2.3 0.0023 Cb medulloblastoma GCAGAGTGTT (6) 2.3 0.0023 Cb medulloblastoma GGAGAAGCTG (4) 2.3 0.0023 Cb medulloblastoma GGCCCACATC (4) 2.3 0.0023 Cb medulloblastoma GGCCCCACCA (3) 2.3 0.0023 Cb medulloblastoma TGTACTGGCA (4) 2.3 0.0023 P8 GC+1d culture GCCCACATCC (5) 87.9 0.0879 P8 GC+1d culture GCAGAGTTTT (3) 19.4 0.0194 P8 GC+1d culture GGTTCACACA (2) 19.4 0.0194 P8 GC+1d culture GGAGAAGCTG (4) 3.4 0.0034 P8 GC+1d culture GGCCCACATC (4) 2.3 0.0023 P8 GC+1d culture TGTACTGGCA (4) 2.3 0.0023 P8 GC+1d culture AACATACAAG (2) 1.1 0.0011 P8 GC+1d culture GAGAAGCCTG (8) 1.1 0.0011 P8 GC+1d culture GAGAAGCTGA (7) 1.1 0.0011 P8 GC+1d culture GCAGAGTTTG (3) 1.1 0.0011 P8 GC+1d culture GCCCACATCA (3) 1.1 0.0011 P8 GC+1d culture TCATCGGCTT 1.1 0.0011 P8 GC+SHH+1d culture GCCCACATCC (5) 56.2 0.0562 P8 GC+SHH+1d culture GCAGAGTTTT (3) 17.6 0.0176 P8 GC+SHH+1d culture GGTTCACACA (2) 7 0.007 P8 GC+SHH+1d culture GCAGAGTTTG (3) 4.7 0.0047 P8 GC+SHH+1d culture TGTACTGGCA (4) 4.7 0.0047 P8 GC+SHH+1d culture GAGAAGCCTG (8) 2.3 0.0023 P8 GC+SHH+1d culture GGAGAAGCTG (4) 2.3 0.0023 P8 GC+SHH+1d culture AACCTGTTCT 1.2 0.0012 P8 GC+SHH+1d culture CCCTGGGTTT (3) 1.2 0.0012 P8 GC+SHH+1d culture GGCCCACATC (4) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts GAGAAGCCTG (8) 7 0.007 3T3 fibroblasts GCCCACATCC (5) 7 0.007 3T3 fibroblasts CCCTGGGTTT (3) 3.5 0.0035 3T3 fibroblasts GCCCACATCA (3) 3.5 0.0035 E15 cortex GCAGAGTTTT (3) 24.7 0.0247 E15 cortex GCAGAGTTTG (3) 14.8 0.0148 E15 cortex GCCCACATCC (5) 14.8 0.0148 E15 cortex GCAGAGTGTT (6) 4.9 0.0049 E15 cortex GGCCCACATC (4) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex GAGAAACTGA (5) 31.8 0.0318 P1 cortex TGTACTGGCA (4) 13.6 0.0136 P1 cortex AACATACAAG (2) 9.1 0.0091 P1 cortex GAGAAGCTGA (7) 4.5 0.0045 P1 cortex GCCCACATCA (3) 4.5 0.0045 P1 cortex GGCCCACATC (4) 4.5 0.0045 Hypothalamus GCAGAGTTTT (3) 32.6 0.0326 Hypothalamus GGCCCACATC (4) 10.9 0.0109 Hypothalamus GGTTCACACA (2) 10.9 0.0109 Hypothalamus GGCCACATCA (6) 7.2 0.0072 Hypothalamus GCAGAGTTTG (3) 5.4 0.0054 Hypothalamus GCCCACATCA (3) 5.4 0.0054 Hypothalamus ACTCTGAGCA (2) 1.8 0.0018 Hypothalamus GAGAAACTGA (5) 1.8 0.0018 Hypothalamus GAGAAGCCTG (8) 1.8 0.0018 Hypothalamus GAGAAGCTGA (7) 1.8 0.0018 Hypothalamus GGCCCCACCA (3) 1.8 0.0018 Hypothalamus TGTACTGGCA (4) 1.8 0.0018 E12.5 retina GCCCACATCC (5) 35.7 0.0357 E12.5 retina GCAGAGTTTG (3) 11.3 0.0113 E12.5 retina GCAGAGTTTT (3) 9.4 0.0094 E12.5 retina GGTTCACACA (2) 5.6 0.0056 E12.5 retina GAGAAGCCTG (8) 1.9 0.0019 E12.5 retina GCAGAGTGTT (6) 1.9 0.0019 E12.5 retina GCCCACATCA (3) 1.9 0.0019 E12.5 retina GGCCCACATC (4) 1.9 0.0019 E14.5 retina GCCCACATCC (5) 56.5 0.0565 E14.5 retina GCAGAGTTTT (3) 10.9 0.0109 E14.5 retina AACATACAAG (2) 7.3 0.0073 E14.5 retina GCAGAGTTTG (3) 7.3 0.0073 E14.5 retina GGTTCACACA (2) 7.3 0.0073 E14.5 retina ACTCTGAGCA (2) 1.8 0.0018 E14.5 retina CCCTGGGTTT (3) 1.8 0.0018 E14.5 retina GCAGAGTGTT (6) 1.8 0.0018 E14.5 retina GGCCACATCA (6) 1.8 0.0018 E14.5 retina TGTACTGGCA (4) 1.8 0.0018 E16.5 retina GCCCACATCC (5) 74.3 0.0743 E16.5 retina GCAGAGTTTT (3) 7.2 0.0072 E16.5 retina GGTTCACACA (2) 5.4 0.0054 E16.5 retina TGTACTGGCA (4) 5.4 0.0054 E16.5 retina GCAGAGTTTG (3) 3.6 0.0036 E16.5 retina GGCCCACATC (4) 3.6 0.0036 E16.5 retina AACATACAAG (2) 1.8 0.0018 E16.5 retina GAGAAGCCTG (8) 1.8 0.0018 E16.5 retina GGAGAAGCTG (4) 1.8 0.0018 E16.5 retina GGCCACATCA (6) 1.8 0.0018 E18.5 retina GCCCACATCC (5) 23.6 0.0236 E18.5 retina GCAGAGTTTT (3) 18.2 0.0182 E18.5 retina GGTTCACACA (2) 10.9 0.0109 E18.5 retina TGTACTGGCA (4) 5.5 0.0055 E18.5 retina GCAGAGTTTG (3) 3.6 0.0036 E18.5 retina GAGAAGCCTG (8) 1.8 0.0018 E18.5 retina GGCCACATCA (6) 1.8 0.0018 E18.5 retina GGCCCACATC (4) 1.8 0.0018 P0.5 retina GCCCACATCC (5) 39.3 0.0393 P0.5 retina GCAGAGTTTG (3) 11.8 0.0118 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina CCCTGGGTTT (3) 2 0.002 P0.5 retina GAGAACCTGA (7) 2 0.002 P0.5 retina GCAGAGTTTT (3) 2 0.002 P0.5 retina GCCCACATCA (3) 2 0.002 P0.5 retina GGTTCACACA (2) 2 0.002 P0.5 retina TGTACTGGCA (4) 2 0.002 P2.5 retina GCCCACATCC (5) 28.2 0.0282 P2.5 retina GCAGAGTTTT (3) 12.3 0.0123 P2.5 retina GCAGAGTTTG (3) 10.6 0.0106 P2.5 retina GGTTCACACA (2) 8.8 0.0088 P2.5 retina GCAGAGTGTT (6) 3.5 0.0035 P2.5 retina AACATACAAG (2) 1.8 0.0018 P2.5 retina GGAGAAGCTG (4) 1.8 0.0018 P2.5 retina GGCCACATCA (6) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TGTACTGGCA (4) 1.8 0.0018 P4.5 retina GCCCACATCC (5) 31.7 0.0317 P4.5 retina GCAGAGTTTT (3) 27.7 0.0277 P4.5 retina GGTTCACACA (2) 19.8 0.0198 P4.5 retina CCCTGGGTTT (3) 4 0.004 P4.5 retina GGAGAAGCTG (4) 2 0.002 P4.5 retina GGCCACATCA (6) 2 0.002 P4.5 retina GGCCCCACCA (3) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TGTACTGGCA (4) 2 0.002 P6.5 retina GCAGAGTTTT (3) 11.7 0.0117 P6.5 retina GCCCACATCC (5) 10 0.01 P6.5 retina GCAGAGTGTT (6) 3.3 0.0033 P6.5 retina GCAGAGTTTG (3) 3.3 0.0033 P6.5 retina GGCCCACATC (4) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina GAGAAGCCTG (8) 1.7 0.0017 P6.5 retina GGTTCACACA (2) 1.7 0.0017 P6.5 retina TGTACCTGTA 1.7 0.0017 P10.5 crx- retina GGTTCACACA (2) 13 0.013 P10.5 crx- retina GCAGAGTTTT (3) 11.1 0.0111 P10.5 crx- retina GCCCACATCC (5) 7.4 0.0074 P10.5 crx- retina GGAGAAGCTG (4) 5.6 0.0056 P10.5 crx- retina GCAGAGTTTG (3) 3.7 0.0037 P10.5 crx- retina TCATCGGCTT 3.7 0.0037 P10.5 crx- retina TGTACTGGCA (4) 3.7 0.0037 P10.5 crx- retina AACATACAAG (2) 1.9 0.0019 P10.5 crx- retina AACCTGTTCT 1.9 0.0019 P10.5 crx- retina GAGAAGCCTG (8) 1.9 0.0019 P10.5 crx- retina GGCCCACATC (4) 1.9 0.0019 P10.5 crx+ retina GCAGAGTTTT (3) 25 0.025 P10.5 crx+ retina GCCCACATCC (5) 11.5 0.0115 P10.5 crx+ retina GCAGAGTTTG (3) 7.7 0.0077 P10.5 crx+ retina GGTTCACACA (2) 7.7 0.0077 P10.5 crx+ retina TGTACTGGCA (4) 5.8 0.0058 P10.5 crx+ retina ACTCTGAGCA (2) 3.8 0.0038 P10.5 crx+ retina GAGAAGCCTG (8) 1.9 0.0019 P10.5 crx+ retina GAGAAGCTGA (7) 1.9 0.0019 P10.5 crx+ retina GGAGAAGCTG (4) 1.9 0.0019 P10.5 crx+ retina GGCCACATCA (6) 1.9 0.0019 Adult retinal GCAGAGTTTT (3) 11.1 0.0111 Adult retinal GGCCCACATC (4) 5.6 0.0056 Adult retinal GGTTCACACA (2) 5.6 0.0056 Adult retinal GAGAAACTGA (5) 3.7 0.0037 Adult retinal AACATACAAG (2) 1.9 0.0019 Adult retinal GAGAAGCCTG (8) 1.9 0.0019 Adult retinal GCAGAGTTTG (3) 1.9 0.0019 Adult retinal GCCCACATCC (5) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL AACATACAAG (2) 9.6 0.0096 ONL GCAGAGTTTG (3) 9.6 0.0096 ONL GGTTCACACA (2) 7.7 0.0077 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GAGAACCTGA (7) 1.9 0.0019 ONL GCCCACATCC (5) 1.9 0.0019