Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277713	D3Jfr1	DNA segment, Chr 3, MJeffers 1	3	3 48.5 cM	229663
Human Homolog	UNR[upstream of NRAS]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 144 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGTTGCTGG (369) 68.5 0.0685 P8 Cb GC CAAATGAAGT (3) 8.2 0.0082 P8 Cb GC AAATTCTGCA (3) 4.9 0.0049 P8 Cb GC AACAAAAAAA (18) 4.9 0.0049 P8 Cb GC TTGAAAAAAA (15) 4.9 0.0049 P8 Cb GC AAGGAGGCGT 3.3 0.0033 P8 Cb GC AAATTCTGGA (5) 1.6 0.0016 P8 Cb GC ACTTAACACT 1.6 0.0016 P8 Cb GC TGCCACCATA (6) 1.6 0.0016 Cb medulloblastoma TGGTTGCTGG (369) 113.3 0.1133 Cb medulloblastoma AACAAAAAAA (18) 9.2 0.0092 Cb medulloblastoma AAATTCTGCA (3) 6.9 0.0069 Cb medulloblastoma CAAATGAAGT (3) 4.6 0.0046 Cb medulloblastoma AAATCTGCCC (5) 2.3 0.0023 Cb medulloblastoma AAGGAGGCGT 2.3 0.0023 Cb medulloblastoma GAAGGGAGGC (4) 2.3 0.0023 Cb medulloblastoma TGCCACCATA (6) 2.3 0.0023 Cb medulloblastoma TTGAAAAAAA (15) 2.3 0.0023 P8 GC+1d culture TGGTTGCTGG (369) 57.1 0.0571 P8 GC+1d culture CAAATGAAGT (3) 4.6 0.0046 P8 GC+1d culture AACAAAAAAA (18) 3.4 0.0034 P8 GC+1d culture AAATTCTGCA (3) 2.3 0.0023 P8 GC+1d culture ACTTAACACT 2.3 0.0023 P8 GC+1d culture TGAAAGAAGT (4) 2.3 0.0023 P8 GC+1d culture AAATCTGCCC (5) 1.1 0.0011 P8 GC+1d culture GATCAAGTGG (3) 1.1 0.0011 P8 GC+1d culture TTGAAAAAAA (15) 1.1 0.0011 P8 GC+SHH+1d culture TGGTTGCTGG (369) 89 0.089 P8 GC+SHH+1d culture TTGAAAAAAA (15) 9.4 0.0094 P8 GC+SHH+1d culture CAAATGAAGT (3) 8.2 0.0082 P8 GC+SHH+1d culture AACAAAAAAA (18) 5.9 0.0059 P8 GC+SHH+1d culture AAATTCTGCA (3) 3.5 0.0035 P8 GC+SHH+1d culture ACTTAACACT 2.3 0.0023 P8 GC+SHH+1d culture GGGGGGAAAG (8) 2.3 0.0023 P8 GC+SHH+1d culture TGAAAGAAGT (4) 2.3 0.0023 P8 GC+SHH+1d culture AAATCTGCCC (5) 1.2 0.0012 3T3 fibroblasts TGGTTGCTGG (369) 220.8 0.2208 3T3 fibroblasts AAATTCTGCA (3) 3.5 0.0035 3T3 fibroblasts CAAATGAAGT (3) 3.5 0.0035 3T3 fibroblasts GGGGGGAAAG (8) 3.5 0.0035 E15 cortex TGGTTGCTGG (369) 277.1 0.2771 E15 cortex GGGGGGAAAG (8) 9.9 0.0099 E15 cortex AACAAAAAAA (18) 4.9 0.0049 E15 cortex AAGGAGGCGT 4.9 0.0049 E15 cortex CAAATGAAGT (3) 4.9 0.0049 E15 cortex GAAGGGAGGC (4) 4.9 0.0049 E15 cortex TGAAAGAAGT (4) 4.9 0.0049 P1 cortex TGGTTGCTGG (369) 86.4 0.0864 Hypothalamus TGGTTGCTGG (369) 349.6 0.3496 Hypothalamus AAATTCTGGA (5) 1.8 0.0018 Hypothalamus AACAAAAAAA (18) 1.8 0.0018 Hypothalamus ACTTAACACT 1.8 0.0018 Hypothalamus TGAAAGAAGT (4) 1.8 0.0018 E12.5 retina TGGTTGCTGG (369) 157.7 0.1577 E12.5 retina CAAATGAAGT (3) 13.1 0.0131 E12.5 retina AAATTCTGCA (3) 7.5 0.0075 E12.5 retina AACAAAAAAA (18) 3.8 0.0038 E12.5 retina AAATTCTGGA (5) 1.9 0.0019 E12.5 retina GGGGGGAAAG (8) 1.9 0.0019 E12.5 retina TTGAAAAAAA (15) 1.9 0.0019 E14.5 retina TGGTTGCTGG (369) 936.5 0.9365 E14.5 retina AAATTCTGGA (5) 9.1 0.0091 E14.5 retina GATCAAGTGG (3) 3.6 0.0036 E14.5 retina AAATTCTGCA (3) 1.8 0.0018 E14.5 retina AACAAAAAAA (18) 1.8 0.0018 E14.5 retina ACTTAACACT 1.8 0.0018 E14.5 retina AGAGATGGTT (2) 1.8 0.0018 E14.5 retina CAAATGAAGT (3) 1.8 0.0018 E14.5 retina GGGGGGAAAG (8) 1.8 0.0018 E14.5 retina TGCCACCATA (6) 1.8 0.0018 E16.5 retina TGGTTGCTGG (369) 767.9 0.7679 E16.5 retina AAATTCTGCA (3) 1.8 0.0018 E16.5 retina AAATTCTGGA (5) 1.8 0.0018 E16.5 retina CAAATGAAGT (3) 1.8 0.0018 E16.5 retina GATCAAGTGG (3) 1.8 0.0018 E16.5 retina TGCCACCATA (6) 1.8 0.0018 E18.5 retina TGGTTGCTGG (369) 252.8 0.2528 E18.5 retina AAATTCTGCA (3) 7.3 0.0073 E18.5 retina AACAAAAAAA (18) 5.5 0.0055 E18.5 retina TTGAAAAAAA (15) 5.5 0.0055 E18.5 retina GGGGGGAAAG (8) 3.6 0.0036 E18.5 retina TGCCACCATA (6) 3.6 0.0036 E18.5 retina AAATTCTGGA (5) 1.8 0.0018 P0.5 retina TGGTTGCTGG (369) 190.4 0.1904 P0.5 retina CAAATGAAGT (3) 5.9 0.0059 P0.5 retina GAAGGGAGGC (4) 3.9 0.0039 P0.5 retina TTGAAAAAAA (15) 3.9 0.0039 P0.5 retina AACAAAAAAA (18) 2 0.002 P0.5 retina GATCAAGTGG (3) 2 0.002 P0.5 retina TGAAAGAAGT (4) 2 0.002 P2.5 retina TGGTTGCTGG (369) 165.4 0.1654 P2.5 retina CAAATGAAGT (3) 8.8 0.0088 P2.5 retina AACAAAAAAA (18) 3.5 0.0035 P2.5 retina AAATCTGCCC (5) 1.8 0.0018 P2.5 retina GATCAAGTGG (3) 1.8 0.0018 P2.5 retina GGGGGGAAAG (8) 1.8 0.0018 P2.5 retina TGAAAGAAGT (4) 1.8 0.0018 P4.5 retina TGGTTGCTGG (369) 150.6 0.1506 P4.5 retina TTGAAAAAAA (15) 7.9 0.0079 P4.5 retina AACAAAAAAA (18) 4 0.004 P4.5 retina CAAATGAAGT (3) 2 0.002 P4.5 retina TGCCACCATA (6) 2 0.002 P6.5 retina TGGTTGCTGG (369) 156.7 0.1567 P6.5 retina AAATCTGCCC (5) 3.3 0.0033 P6.5 retina AAATTCTGCA (3) 3.3 0.0033 P6.5 retina CAAATGAAGT (3) 3.3 0.0033 P6.5 retina GGGGGGAAAG (8) 3.3 0.0033 P6.5 retina TGCCACCATA (6) 3.3 0.0033 P6.5 retina AAATTCTGGA (5) 1.7 0.0017 P6.5 retina CAAAAGGCCC (6) 1.7 0.0017 P6.5 retina GAAGGGAGGC (4) 1.7 0.0017 P10.5 crx- retina TGGTTGCTGG (369) 280.5 0.2805 P10.5 crx- retina AAATCTGCCC (5) 3.7 0.0037 P10.5 crx- retina AAATTCTGCA (3) 3.7 0.0037 P10.5 crx- retina AACAAAAAAA (18) 3.7 0.0037 P10.5 crx- retina GAAGGGAGGC (4) 1.9 0.0019 P10.5 crx- retina TTGAAAAAAA (15) 1.9 0.0019 P10.5 crx+ retina TGGTTGCTGG (369) 101.9 0.1019 P10.5 crx+ retina AAATTCTGCA (3) 5.8 0.0058 P10.5 crx+ retina CAAATGAAGT (3) 5.8 0.0058 P10.5 crx+ retina TGCCACCATA (6) 3.8 0.0038 P10.5 crx+ retina AAATCTGCCC (5) 1.9 0.0019 P10.5 crx+ retina AACAAAAAAA (18) 1.9 0.0019 P10.5 crx+ retina ACTTAACACT 1.9 0.0019 P10.5 crx+ retina CAAAAGGCCC (6) 1.9 0.0019 P10.5 crx+ retina GATCAAGTGG (3) 1.9 0.0019 P10.5 crx+ retina GGGGGGAAAG (8) 1.9 0.0019 Adult retinal TGGTTGCTGG (369) 214.8 0.2148 Adult retinal AAATCTGCCC (5) 16.7 0.0167 Adult retinal CAAATGAAGT (3) 9.3 0.0093 Adult retinal GAAGGGAGGC (4) 5.6 0.0056 Adult retinal TGAAAGAAGT (4) 3.7 0.0037 Adult retinal CAAAAGGCCC (6) 1.9 0.0019 Adult retinal GAAACAATAA (3) 1.9 0.0019 Adult retinal TTGAAAAAAA (15) 1.9 0.0019 ONL TGGTTGCTGG (369) 398.4 0.3984 ONL AAATCTGCCC (5) 24.9 0.0249 ONL CAAATGAAGT (3) 7.7 0.0077 ONL AGAGATGGTT (2) 5.7 0.0057 ONL GAAACAATAA (3) 3.8 0.0038 ONL GAAGGGAGGC (4) 3.8 0.0038 ONL TTGAAAAAAA (15) 3.8 0.0038 ONL AAATTCTGCA (3) 1.9 0.0019 ONL TGCCACCATA (6) 1.9 0.0019