Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.278560	Atp5d	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	10		66043
Gene Ontology	hydrogen ion transporter activity | mitochondrial membrane | proton transport | proton-transporting ATP synthase complex
Human Homolog	ATP5D[ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 97 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAGGATTCCC (2) 21.2 0.0212 P8 Cb GC TCCCCCACAC (5) 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC CAGGACCTGG (4) 3.3 0.0033 P8 Cb GC AAACCCTATT (5) 1.6 0.0016 P8 Cb GC CTGGACCTGG (3) 1.6 0.0016 P8 Cb GC CTGGAGCTGG (7) 1.6 0.0016 P8 Cb GC GAGGGAATCC (5) 1.6 0.0016 Cb medulloblastoma GAGGATTCCC (2) 27.7 0.0277 Cb medulloblastoma AAGCCCTTGA (5) 2.3 0.0023 Cb medulloblastoma TTGCCCGCCT (2) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture GAGGATTCCC (2) 35.4 0.0354 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture TCCCCCACAC (5) 5.7 0.0057 P8 GC+1d culture ACCTGGCAAA 2.3 0.0023 P8 GC+1d culture AAACCCTATT (5) 1.1 0.0011 P8 GC+1d culture ACCTGGCAGA (3) 1.1 0.0011 P8 GC+1d culture GAGGGAATCC (5) 1.1 0.0011 P8 GC+SHH+1d culture GAGGATTCCC (2) 32.8 0.0328 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture CTGGACCTGG (3) 3.5 0.0035 P8 GC+SHH+1d culture ACCTGGCAGA (3) 2.3 0.0023 P8 GC+SHH+1d culture AAGCCCTTGA (5) 1.2 0.0012 P8 GC+SHH+1d culture CTGGAGCTGG (7) 1.2 0.0012 P8 GC+SHH+1d culture TCCCCCACAC (5) 1.2 0.0012 3T3 fibroblasts GAGGATTCCC (2) 21 0.021 3T3 fibroblasts TCCCCCACAC (5) 3.5 0.0035 E15 cortex GAGGATTCCC (2) 34.6 0.0346 E15 cortex AAGCCCTTGA (5) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GAGGATTCCC (2) 27.3 0.0273 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus GAGGATTCCC (2) 41.7 0.0417 Hypothalamus ACCTGGCAGA (3) 7.2 0.0072 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TCCCCCACAC (5) 5.4 0.0054 Hypothalamus TTGCCCGCCT (2) 5.4 0.0054 Hypothalamus CTGGACCTGG (3) 3.6 0.0036 E12.5 retina GAGGATTCCC (2) 26.3 0.0263 E12.5 retina TCCCCCACAC (5) 13.1 0.0131 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina ACCTGGCAGA (3) 5.6 0.0056 E12.5 retina CTGGACCTGG (3) 1.9 0.0019 E12.5 retina GAAACCAAGA (5) 1.9 0.0019 E12.5 retina TTGCCCGCCT (2) 1.9 0.0019 E14.5 retina GAGGATTCCC (2) 31 0.031 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina TCCCCCACAC (5) 16.4 0.0164 E14.5 retina ACCTGGCAGA (3) 1.8 0.0018 E14.5 retina CAGGACCTGG (4) 1.8 0.0018 E16.5 retina GAGGATTCCC (2) 45.3 0.0453 E16.5 retina ACCTGGCAGA (3) 5.4 0.0054 E16.5 retina TCCCCCACAC (5) 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GAGGGAATCC (5) 1.8 0.0018 E16.5 retina TTGCCCGCCT (2) 1.8 0.0018 E18.5 retina GAGGATTCCC (2) 43.7 0.0437 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina TCCCCCACAC (5) 3.6 0.0036 E18.5 retina AAACCCTATT (5) 1.8 0.0018 E18.5 retina ACCTGGCAGA (3) 1.8 0.0018 P0.5 retina GAGGATTCCC (2) 23.6 0.0236 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TCCCCCACAC (5) 5.9 0.0059 P0.5 retina CTCTGGAGAA 2 0.002 P2.5 retina GAGGATTCCC (2) 37 0.037 P2.5 retina TCCCCCACAC (5) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P4.5 retina GAGGATTCCC (2) 35.7 0.0357 P4.5 retina TCCCCCACAC (5) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P6.5 retina GAGGATTCCC (2) 23.3 0.0233 P6.5 retina TCCCCCACAC (5) 20 0.02 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina CTGGAGCTGG (7) 1.7 0.0017 P10.5 crx- retina GAGGATTCCC (2) 27.9 0.0279 P10.5 crx- retina TCCCCCACAC (5) 11.1 0.0111 P10.5 crx- retina AAGCCCTTGA (5) 3.7 0.0037 P10.5 crx- retina CAGGACCTGG (4) 1.9 0.0019 P10.5 crx- retina CTGGACCTGG (3) 1.9 0.0019 P10.5 crx- retina GAAACCAAGA (5) 1.9 0.0019 P10.5 crx- retina GAGGGAATCC (5) 1.9 0.0019 P10.5 crx+ retina GAGGATTCCC (2) 26.9 0.0269 P10.5 crx+ retina TCCCCCACAC (5) 19.2 0.0192 P10.5 crx+ retina ACCTGGCAGA (3) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 Adult retinal GAGGATTCCC (2) 25.9 0.0259 Adult retinal TCCCCCACAC (5) 7.4 0.0074 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal CTCTGGAGAA 3.7 0.0037 Adult retinal CTGGAGCTGG (7) 1.9 0.0019 ONL GAGGATTCCC (2) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL AAGCCCTTGA (5) 1.9 0.0019 ONL CTGGACCTGG (3) 1.9 0.0019 ONL GAAACCAAGA (5) 1.9 0.0019