Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.278701	Srebf1	sterol regulatory element binding factor 1	8	8 33.0 cM	20787
Gene Ontology	cholesterol metabolism | DNA binding | endoplasmic reticulum | Golgi apparatus | integral to membrane | lipid metabolism | nucleus | regulation of transcription | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	SREBF1[sterol regulatory element binding transcription factor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 79 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGGCCACAGC CTCGCTTCTG (2) GCTGCCACCA (2) GTGACACCTG (3) TACTACTTTG 22.7 0.0227 Cb medulloblastoma AGGCCACAGC GCTGCCACCA (2) GTGACACCTG (3) TACTACTTTG 18.4 0.0184 P8 GC+1d culture AGGCCACAGC GTGACACCTG (3) 8 0.008 P8 GC+SHH+1d culture AGGCCACAGC CTCGCTTCTG (2) GCTGCCACCA (2) TACTACTTTG 27 0.027 3T3 fibroblasts CGTGCAGGCA CTCGCTTCTG (2) GCTGCCACCA (2) GTGACACCTG (3) 49.1 0.0491 E15 cortex AGGCCACAGC CTGGCCGAGG (2) GCTGCCACCA (2) GGCCTGCCCT GTGACACCTG (3) 49.4 0.0494 P1 cortex GCTGCCACCA (2) GTGACACCTG (3) TACTACTTTG 22.7 0.0227 Hypothalamus AGGCCACAGC CTGGCCGAGG (2) GTGACACCTG (3) TACTACTTTG 27.2 0.0272 E12.5 retina AGGCCACAGC CTCGCTTCTG (2) TACTACTTTG 11.3 0.0113 E14.5 retina AGGCCACAGC CGTGCAGGCA CTCGCTTCTG (2) TACTACTTTG 32.8 0.0328 E16.5 retina AGGCCACAGC GCTGCCACCA (2) GGCCTGCCCT GTGACACCTG (3) TACTACTTTG 45.2 0.0452 E18.5 retina AGGCCACAGC GGCCTGCCCT GTGACACCTG (3) TACTACTTTG 16.4 0.0164 P0.5 retina CTCGCTTCTG (2) TACTACTTTG 11.8 0.0118 P2.5 retina AGGCCACAGC CTCGCTTCTG (2) CTGGCCGAGG (2) GCTGCCACCA (2) TACTACTTTG 21.2 0.0212 P4.5 retina AGGCCACAGC GTGACACCTG (3) TACTACTTTG 15.9 0.0159 P6.5 retina AGGCCACAGC CTCGCTTCTG (2) GCCCCAACAG GCTGCCACCA (2) GTGACACCTG (3) TACTACTTTG 25.2 0.0252 P10.5 crx- retina AGGCCACAGC GCCCCAACAG GGCCTGCCCT GTGACACCTG (3) TACTACTTTG 48.4 0.0484 P10.5 crx+ retina AGGCCACAGC GCCCCAACAG GTGACACCTG (3) TACTACTTTG 17.3 0.0173 Adult retinal GCCCCAACAG GTGACACCTG (3) TACTACTTTG 11.2 0.0112 ONL CGTGCAGGCA GCCCCAACAG GTGACACCTG (3) TACTACTTTG 19 0.019