Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.279736	A430105D02Rik	RIKEN cDNA A430105D02 gene	1		77188
Mm.279736	Sf3b1	splicing factor 3b, subunit 1	1	1 28.9 cM	81898
Gene Ontology	mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | spliceosome complex
Human Homolog	SF3B1[splicing factor 3b, subunit 1, 155kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 48 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTTTTAAAT (2) CAAACTGAAG (3) CAGAATGTTG (4) TTCTTAAGGG (2) 11.4 0.0114 Cb medulloblastoma CAAACTGAAG (3) CAGGACGCAC (2) 4.6 0.0046 P8 GC+1d culture ATTTTTAAAT (2) CAAACTGAAG (3) CAGAATGTTG (4) TAACGGAAGG (2) 6.7 0.0067 P8 GC+SHH+1d culture ATTTTTAAAT (2) CAAACTGAAG (3) TTCTTAAGGG (2) 4.7 0.0047 3T3 fibroblasts CAAACTGAAG (3) 7 0.007 E15 cortex CAAACTGAAG (3) TGGAAACCAG (2) 24.7 0.0247 P1 cortex CAAACTGAAG (3) TTCTTAAGGG (2) 18.1 0.0181 Hypothalamus ATTTTTAAAT (2) TTCTTAAGGG (2) 5.4 0.0054 E12.5 retina CAAACTGAAG (3) TTCTTAAGGG (2) 5.7 0.0057 E14.5 retina ATTTTTAAAT (2) CAAACTGAAG (3) 7.2 0.0072 E16.5 retina CAAACTGAAG (3) TTCTTAAGGG (2) 5.4 0.0054 E18.5 retina CAAACTGAAG (3) TTCTTAAGGG (2) 3.6 0.0036 P0.5 retina CAGGACGCAC (2) 2 0.002 P2.5 retina CAAACTGAAG (3) CAGGACGCAC (2) TAACGGAAGG (2) TTCTTAAGGG (2) 7.2 0.0072 P4.5 retina CAAACTGAAG (3) CAGAATGTTG (4) TGGAAACCAG (2) TTCTTAAGGG (2) 14 0.014 P6.5 retina CAAACTGAAG (3) CAGAATGTTG (4) CAGGACGCAC (2) TTCTTAAGGG (2) 10.1 0.0101 P10.5 crx- retina ATTTTTAAAT (2) CAGAATGTTG (4) CAGGACGCAC (2) TAACGGAAGG (2) 9.4 0.0094 P10.5 crx+ retina CAGAATGTTG (4) TGGAAACCAG (2) 3.8 0.0038 Adult retinal ATTTTTAAAT (2) 3.7 0.0037