Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.280068	Chc1l	chromosome condensation 1-like	14		105670
Gene Ontology	protein binding
Human Homolog	CHC1L[chromosome condensation 1-like]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 82 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCAGGAAACA (3) 13.1 0.0131 P8 Cb GC TATAATTATT 6.5 0.0065 P8 Cb GC GCTGTTGTGC (2) 1.6 0.0016 P8 Cb GC TTTTTCCCAA (4) 1.6 0.0016 Cb medulloblastoma TCAGGAAACA (3) 6.9 0.0069 Cb medulloblastoma CAGACCTCAA (4) 2.3 0.0023 Cb medulloblastoma CGGGCATCGG (2) 2.3 0.0023 Cb medulloblastoma TGGGGCCAGT (2) 2.3 0.0023 P8 GC+1d culture TCAGGAAACA (3) 10.3 0.0103 P8 GC+1d culture CAGACCTCAA (4) 2.3 0.0023 P8 GC+1d culture TTTTTCCCAA (4) 2.3 0.0023 P8 GC+1d culture CGGGCATCGG (2) 1.1 0.0011 P8 GC+1d culture GCTGTTGTGC (2) 1.1 0.0011 P8 GC+SHH+1d culture TCAGGAAACA (3) 15.2 0.0152 P8 GC+SHH+1d culture CGGGCATCGG (2) 4.7 0.0047 P8 GC+SHH+1d culture CAGACCTCAA (4) 2.3 0.0023 P8 GC+SHH+1d culture TGGGGCCAGT (2) 2.3 0.0023 P8 GC+SHH+1d culture GCTGTTGTGC (2) 1.2 0.0012 3T3 fibroblasts CAGACCTCAA (4) 3.5 0.0035 3T3 fibroblasts CGGGCATCGG (2) 3.5 0.0035 E15 cortex GCTGTTGTGC (2) 4.9 0.0049 P1 cortex CAGACCTCAA (4) 18.2 0.0182 P1 cortex TCAGGAAACA (3) 9.1 0.0091 P1 cortex CGGGCATCGG (2) 4.5 0.0045 P1 cortex TTTTTCCCAA (4) 4.5 0.0045 Hypothalamus TCAGGAAACA (3) 12.7 0.0127 Hypothalamus CGGGCATCGG (2) 3.6 0.0036 Hypothalamus CAGACCTCAA (4) 1.8 0.0018 Hypothalamus TATAATTATT 1.8 0.0018 Hypothalamus TGGGGCCAGT (2) 1.8 0.0018 E12.5 retina TCAGGAAACA (3) 24.4 0.0244 E12.5 retina AGAGGAGGAA 1.9 0.0019 E12.5 retina CGGGCATCGG (2) 1.9 0.0019 E12.5 retina GCTGTTGTGC (2) 1.9 0.0019 E12.5 retina TATAATTATT 1.9 0.0019 E14.5 retina TCAGGAAACA (3) 21.9 0.0219 E14.5 retina TATAATTATT 7.3 0.0073 E14.5 retina CGGGCATCGG (2) 5.5 0.0055 E14.5 retina CAGACCTCAA (4) 3.6 0.0036 E14.5 retina GCTGTTGTGC (2) 1.8 0.0018 E16.5 retina TCAGGAAACA (3) 16.3 0.0163 E16.5 retina GCTGTTGTGC (2) 3.6 0.0036 E16.5 retina CGGGCATCGG (2) 1.8 0.0018 E16.5 retina TATAATTATT 1.8 0.0018 E16.5 retina TTTTTCCCAA (4) 1.8 0.0018 E18.5 retina TCAGGAAACA (3) 10.9 0.0109 E18.5 retina GCTGTTGTGC (2) 5.5 0.0055 E18.5 retina TATAATTATT 3.6 0.0036 E18.5 retina CAGACCTCAA (4) 1.8 0.0018 E18.5 retina TTTTTCCCAA (4) 1.8 0.0018 P0.5 retina GCTGTTGTGC (2) 3.9 0.0039 P0.5 retina AGAGGAGGAA 2 0.002 P0.5 retina TCAGGAAACA (3) 2 0.002 P0.5 retina TGGGGCCAGT (2) 2 0.002 P2.5 retina TCAGGAAACA (3) 17.6 0.0176 P2.5 retina GCTGTTGTGC (2) 8.8 0.0088 P2.5 retina CGGGCATCGG (2) 3.5 0.0035 P2.5 retina CAGACCTCAA (4) 1.8 0.0018 P2.5 retina TATAATTATT 1.8 0.0018 P4.5 retina TCAGGAAACA (3) 13.9 0.0139 P4.5 retina CAGACCTCAA (4) 5.9 0.0059 P4.5 retina CGGGCATCGG (2) 5.9 0.0059 P4.5 retina GCTGTTGTGC (2) 2 0.002 P6.5 retina TCAGGAAACA (3) 18.3 0.0183 P6.5 retina CGGGCATCGG (2) 13.3 0.0133 P6.5 retina AGAGGAGGAA 3.3 0.0033 P6.5 retina GCTGTTGTGC (2) 3.3 0.0033 P6.5 retina CAGACCTCAA (4) 1.7 0.0017 P10.5 crx- retina TCAGGAAACA (3) 11.1 0.0111 P10.5 crx- retina CGGGCATCGG (2) 5.6 0.0056 P10.5 crx- retina GCTGTTGTGC (2) 1.9 0.0019 P10.5 crx- retina TTTTTCCCAA (4) 1.9 0.0019 P10.5 crx+ retina CGGGCATCGG (2) 19.2 0.0192 P10.5 crx+ retina TCAGGAAACA (3) 11.5 0.0115 P10.5 crx+ retina CAGACCTCAA (4) 1.9 0.0019 P10.5 crx+ retina GCTGTTGTGC (2) 1.9 0.0019 P10.5 crx+ retina TGGGGCCAGT (2) 1.9 0.0019 Adult retinal TCAGGAAACA (3) 7.4 0.0074 Adult retinal CAGACCTCAA (4) 1.9 0.0019 Adult retinal CGGGCATCGG (2) 1.9 0.0019 ONL TCAGGAAACA (3) 15.3 0.0153 ONL CGGGCATCGG (2) 5.7 0.0057