Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28357	Map1lc3b	microtubule-associated protein 1 light chain 3 beta	8		67443
Gene Ontology	microtubule-based process | protein binding
Human Homolog	MAP1LC3B[microtubule-associated protein 1 light chain 3 beta]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 103 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGCTTTTTT (3) 44 0.044 P8 Cb GC CAGCTGTCTT 13.1 0.0131 P8 Cb GC CAGCTGTTTA (5) 4.9 0.0049 P8 Cb GC CAAGTGCACT (4) 3.3 0.0033 P8 Cb GC GACTGAAGCC (6) 3.3 0.0033 P8 Cb GC TATGTACTGA (6) 3.3 0.0033 P8 Cb GC AGCGAGCTCA 1.6 0.0016 P8 Cb GC CAGTTATTTT (6) 1.6 0.0016 Cb medulloblastoma CAGCTGTCTT 18.5 0.0185 Cb medulloblastoma AGCGAGCTCA 2.3 0.0023 Cb medulloblastoma CAGCTCGCTG (2) 2.3 0.0023 Cb medulloblastoma CAGGGAAGGT 2.3 0.0023 Cb medulloblastoma CAGTTATTTT (6) 2.3 0.0023 Cb medulloblastoma GGCAGCTGTC (3) 2.3 0.0023 Cb medulloblastoma TATGTACTGA (6) 2.3 0.0023 P8 GC+1d culture CAGCTTTTTT (3) 34.2 0.0342 P8 GC+1d culture CAGCTGTCTT 25.1 0.0251 P8 GC+1d culture CAAGTGCACT (4) 11.4 0.0114 P8 GC+1d culture CAGCTGTTTA (5) 9.1 0.0091 P8 GC+1d culture TATGTACTGA (6) 5.7 0.0057 P8 GC+1d culture GACTGAAGCC (6) 4.6 0.0046 P8 GC+1d culture CAGCTCGCTG (2) 1.1 0.0011 P8 GC+1d culture CAGTTATTTT (6) 1.1 0.0011 P8 GC+1d culture TCCCTGTGCA 1.1 0.0011 P8 GC+SHH+1d culture CAGCTTTTTT (3) 32.8 0.0328 P8 GC+SHH+1d culture CAGCTGTCTT 26.9 0.0269 P8 GC+SHH+1d culture CAAGTGCACT (4) 10.5 0.0105 P8 GC+SHH+1d culture TATGTACTGA (6) 4.7 0.0047 P8 GC+SHH+1d culture CAGCTGTTTA (5) 3.5 0.0035 P8 GC+SHH+1d culture CAGGGAAGGT 2.3 0.0023 P8 GC+SHH+1d culture CAGTTATTTT (6) 2.3 0.0023 P8 GC+SHH+1d culture CAAAGTGCAC 1.2 0.0012 P8 GC+SHH+1d culture GGCAGCTGTC (3) 1.2 0.0012 3T3 fibroblasts CAGCTGTCTT 10.5 0.0105 3T3 fibroblasts CAAGTGCACT (4) 7 0.007 3T3 fibroblasts GGCAGCTGTC (3) 3.5 0.0035 3T3 fibroblasts GTGGGTGGGT (5) 3.5 0.0035 E15 cortex CAGCTTTTTT (3) 19.8 0.0198 E15 cortex CAAGTGCACT (4) 4.9 0.0049 E15 cortex CAGCTCGCTG (2) 4.9 0.0049 E15 cortex CAGCTGTCTT 4.9 0.0049 E15 cortex GAGCTCAGTT 4.9 0.0049 P1 cortex CAGCTGTCTT 13.6 0.0136 Hypothalamus CAGCTGTCTT 14.5 0.0145 Hypothalamus GACTGAAGCC (6) 3.6 0.0036 Hypothalamus CAAGTGCACT (4) 1.8 0.0018 Hypothalamus CAGCTGTTTA (5) 1.8 0.0018 Hypothalamus CAGGGAAGGT 1.8 0.0018 Hypothalamus TATGTACTGA (6) 1.8 0.0018 E12.5 retina CAGCTGTCTT 9.4 0.0094 E12.5 retina CAAGTGCACT (4) 5.6 0.0056 E12.5 retina TATGTACTGA (6) 5.6 0.0056 E12.5 retina CAGCTTTTTT (3) 1.9 0.0019 E14.5 retina CAGCTGTCTT 12.8 0.0128 E14.5 retina CAAGTGCACT (4) 10.9 0.0109 E14.5 retina GAGCTCAGTT 3.6 0.0036 E14.5 retina AGCGAGCTCA 1.8 0.0018 E14.5 retina CAGCTTTTTT (3) 1.8 0.0018 E16.5 retina CAGCTGTCTT 10.9 0.0109 E16.5 retina CAAGTGCACT (4) 9.1 0.0091 E16.5 retina GAGCTCAGTT 1.8 0.0018 E16.5 retina TATGTACTGA (6) 1.8 0.0018 E18.5 retina CAAGTGCACT (4) 7.3 0.0073 E18.5 retina CAGGGAAGGT 5.5 0.0055 E18.5 retina CAGCTGTCTT 3.6 0.0036 E18.5 retina AACAAGCTCT (3) 1.8 0.0018 E18.5 retina CAAAGTGCAC 1.8 0.0018 P0.5 retina CAGCTGTCTT 25.5 0.0255 P0.5 retina CAAGTGCACT (4) 3.9 0.0039 P0.5 retina CAGCTGTTTA (5) 2 0.002 P0.5 retina CAGGGAAGGT 2 0.002 P0.5 retina GTGGGTGGGT (5) 2 0.002 P2.5 retina CAAGTGCACT (4) 12.3 0.0123 P2.5 retina CAGCTGTCTT 8.8 0.0088 P2.5 retina CAGCTGTTTA (5) 5.3 0.0053 P2.5 retina CAGTTATTTT (6) 3.5 0.0035 P4.5 retina CAGCTGTCTT 15.9 0.0159 P4.5 retina CAAGTGCACT (4) 13.9 0.0139 P4.5 retina CAGCTGTTTA (5) 2 0.002 P4.5 retina CAGCTTTTTT (3) 2 0.002 P6.5 retina CAGCTGTCTT 10 0.01 P6.5 retina CAAGTGCACT (4) 6.7 0.0067 P6.5 retina CAGTTATTTT (6) 5 0.005 P6.5 retina CAGGGAAGGT 3.3 0.0033 P6.5 retina AACAAGCTCT (3) 1.7 0.0017 P6.5 retina CAAAGTGCAC 1.7 0.0017 P6.5 retina CAGCTGTTTA (5) 1.7 0.0017 P6.5 retina CAGCTTTTTT (3) 1.7 0.0017 P10.5 crx- retina CAAGTGCACT (4) 13 0.013 P10.5 crx- retina CAGCTGTCTT 13 0.013 P10.5 crx- retina AACAAGCTCT (3) 5.6 0.0056 P10.5 crx- retina TCCCTGTGCA 1.9 0.0019 P10.5 crx+ retina CAGCTGTCTT 15.4 0.0154 P10.5 crx+ retina CAAGTGCACT (4) 9.6 0.0096 P10.5 crx+ retina CAGGGAAGGT 1.9 0.0019 P10.5 crx+ retina GTGGGTGGGT (5) 1.9 0.0019 Adult retinal CAGCTGTCTT 9.3 0.0093 Adult retinal AACAAGCTCT (3) 3.7 0.0037 Adult retinal CAAGTGCACT (4) 1.9 0.0019 Adult retinal TCCCTGTGCA 1.9 0.0019 ONL AACAAGCTCT (3) 3.8 0.0038 ONL CAAGTGCACT (4) 3.8 0.0038 ONL CAGCTGTCTT 3.8 0.0038