Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28694	Lsm6	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	8		78651
Gene Ontology	cytoplasm | mRNA catabolism | mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | protein heterodimerization activity | ribonucleoprotein complex | RNA binding | small nucleolar ribonucleoprotein complex
Human Homolog	LSM6[LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 60 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTAAAACA (3) 27.7 0.0277 P8 Cb GC GTGGCTGGTG (10) 22.8 0.0228 P8 Cb GC TTACCTCCTT 4.9 0.0049 P8 Cb GC TTGTCCCCTG 3.3 0.0033 Cb medulloblastoma GATTAAAACA (3) 37 0.037 Cb medulloblastoma GTGGCTGGTG (10) 6.9 0.0069 Cb medulloblastoma TTGTCCCCTG 2.3 0.0023 P8 GC+1d culture GTGGCTGGTG (10) 14.8 0.0148 P8 GC+1d culture GATTAAAACA (3) 10.3 0.0103 P8 GC+1d culture TTGTCCCCTG 2.3 0.0023 P8 GC+1d culture TAGCCATCCA (2) 1.1 0.0011 P8 GC+SHH+1d culture GTGGCTGGTG (10) 17.6 0.0176 P8 GC+SHH+1d culture GATTAAAACA (3) 14.1 0.0141 P8 GC+SHH+1d culture TTACCTCCTT 2.3 0.0023 P8 GC+SHH+1d culture TTGTCCCCTG 1.2 0.0012 3T3 fibroblasts GTGGCTGGTG (10) 21 0.021 E15 cortex GTGGCTGGTG (10) 14.8 0.0148 P1 cortex GTGGCTGGTG (10) 9.1 0.0091 P1 cortex GATTAAAACA (3) 4.5 0.0045 Hypothalamus GATTAAAACA (3) 21.7 0.0217 Hypothalamus GTGGCTGGTG (10) 12.7 0.0127 E12.5 retina GTGGCTGGTG (10) 22.5 0.0225 E12.5 retina GATTAAAACA (3) 15 0.015 E12.5 retina TAGCCATCCA (2) 1.9 0.0019 E12.5 retina TTGTCCCCTG 1.9 0.0019 E14.5 retina GTGGCTGGTG (10) 21.9 0.0219 E14.5 retina GATTAAAACA (3) 18.2 0.0182 E14.5 retina GATAAAAACA (6) 3.6 0.0036 E16.5 retina GTGGCTGGTG (10) 23.5 0.0235 E16.5 retina GATTAAAACA (3) 18.1 0.0181 E16.5 retina TAGCCATCCA (2) 5.4 0.0054 E16.5 retina TTGTCCCCTG 3.6 0.0036 E18.5 retina GATTAAAACA (3) 29.1 0.0291 E18.5 retina GTGGCTGGTG (10) 21.8 0.0218 E18.5 retina TTGTCCCCTG 3.6 0.0036 E18.5 retina TAGCCATCCA (2) 1.8 0.0018 P0.5 retina GTGGCTGGTG (10) 17.7 0.0177 P0.5 retina GATTAAAACA (3) 9.8 0.0098 P0.5 retina TTGTCCCCTG 5.9 0.0059 P2.5 retina GATTAAAACA (3) 31.7 0.0317 P2.5 retina GTGGCTGGTG (10) 21.1 0.0211 P4.5 retina GATTAAAACA (3) 33.7 0.0337 P4.5 retina GTGGCTGGTG (10) 21.8 0.0218 P4.5 retina GATAAAAACA (6) 2 0.002 P6.5 retina GATTAAAACA (3) 31.7 0.0317 P6.5 retina GTGGCTGGTG (10) 15 0.015 P6.5 retina TTGTCCCCTG 3.3 0.0033 P10.5 crx- retina GATTAAAACA (3) 14.9 0.0149 P10.5 crx- retina GTGGCTGGTG (10) 5.6 0.0056 P10.5 crx- retina TTGTCCCCTG 1.9 0.0019 P10.5 crx+ retina GATTAAAACA (3) 19.2 0.0192 P10.5 crx+ retina GTGGCTGGTG (10) 13.5 0.0135 P10.5 crx+ retina TTGTCCCCTG 1.9 0.0019 Adult retinal GATTAAAACA (3) 18.5 0.0185 Adult retinal GTGGCTGGTG (10) 11.1 0.0111 Adult retinal TTGTCCCCTG 1.9 0.0019 ONL GATTAAAACA (3) 19.2 0.0192 ONL GTGGCTGGTG (10) 9.6 0.0096 ONL TAGCCATCCA (2) 1.9 0.0019 ONL TTGTCCCCTG 1.9 0.0019