Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.28694	Lsm6	LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	8		78651
Gene Ontology	cytoplasm | mRNA catabolism | mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | protein heterodimerization activity | ribonucleoprotein complex | RNA binding | small nucleolar ribonucleoprotein complex
Human Homolog	LSM6[LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 60 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATTAAAACA GTGGCTGGTG (2) TTACCTCCTT TTGTCCCCTG 58.7 0.0587 Cb medulloblastoma GATTAAAACA GTGGCTGGTG (2) TTGTCCCCTG 46.2 0.0462 P8 GC+1d culture GATTAAAACA GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 28.5 0.0285 P8 GC+SHH+1d culture GATTAAAACA GTGGCTGGTG (2) TTACCTCCTT TTGTCCCCTG 35.2 0.0352 3T3 fibroblasts GTGGCTGGTG (2) 21 0.021 E15 cortex GTGGCTGGTG (2) 14.8 0.0148 P1 cortex GATTAAAACA GTGGCTGGTG (2) 13.6 0.0136 Hypothalamus GATTAAAACA GTGGCTGGTG (2) 34.4 0.0344 E12.5 retina GATTAAAACA GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 41.3 0.0413 E14.5 retina GATAAAAACA (3) GATTAAAACA GTGGCTGGTG (2) 43.7 0.0437 E16.5 retina GATTAAAACA GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 50.6 0.0506 E18.5 retina GATTAAAACA GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 56.3 0.0563 P0.5 retina GATTAAAACA GTGGCTGGTG (2) TTGTCCCCTG 33.4 0.0334 P2.5 retina GATTAAAACA GTGGCTGGTG (2) 52.8 0.0528 P4.5 retina GATAAAAACA (3) GATTAAAACA GTGGCTGGTG (2) 57.5 0.0575 P6.5 retina GATTAAAACA GTGGCTGGTG (2) TTGTCCCCTG 50 0.05 P10.5 crx- retina GATTAAAACA GTGGCTGGTG (2) TTGTCCCCTG 22.4 0.0224 P10.5 crx+ retina GATTAAAACA GTGGCTGGTG (2) TTGTCCCCTG 34.6 0.0346 Adult retinal GATTAAAACA GTGGCTGGTG (2) TTGTCCCCTG 31.5 0.0315 ONL GATTAAAACA GTGGCTGGTG (2) TAGCCATCCA (2) TTGTCCCCTG 32.6 0.0326