Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288682	Cpsf6	cleavage and polyadenylation specific factor 6	10		66698
Gene Ontology	nucleic acid binding
Human Homolog	CPSF6[cleavage and polyadenylation specific factor 6, 68kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 7 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 147 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC GTATTTATCT 9.8 0.0098 P8 Cb GC TACCATTTAA (9) 8.2 0.0082 P8 Cb GC GATAAACTGA 6.5 0.0065 P8 Cb GC GCTCAAGGAA 6.5 0.0065 P8 Cb GC AATTTTTAAA (9) 3.3 0.0033 P8 Cb GC ACTAATTAAG 3.3 0.0033 P8 Cb GC TGTTTACAAG 3.3 0.0033 P8 Cb GC AAGCCTTACA 1.6 0.0016 P8 Cb GC GAGATCAAGA (5) 1.6 0.0016 P8 Cb GC GTGTGGCTTG (3) 1.6 0.0016 P8 Cb GC TTTAATTCAC (3) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TACCATTTAA (9) 13.9 0.0139 Cb medulloblastoma AATTTTTAAA (9) 4.6 0.0046 Cb medulloblastoma AATGTATAGC 2.3 0.0023 Cb medulloblastoma CACAGTCTCT (2) 2.3 0.0023 Cb medulloblastoma GGAGTAAATT 2.3 0.0023 Cb medulloblastoma GTATTTATCT 2.3 0.0023 Cb medulloblastoma TGTTTACAAG 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TACCATTTAA (9) 6.8 0.0068 P8 GC+1d culture GCTCAAGGAA 4.6 0.0046 P8 GC+1d culture GTATTTATCT 4.6 0.0046 P8 GC+1d culture CCAACATCAG (2) 1.1 0.0011 P8 GC+1d culture CTAGCCAGGT 1.1 0.0011 P8 GC+1d culture GAGATCAAGA (5) 1.1 0.0011 P8 GC+1d culture GTGTGGCTTG (3) 1.1 0.0011 P8 GC+1d culture TATGTCCACA 1.1 0.0011 P8 GC+1d culture TTTGCTTATG 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TACCATTTAA (9) 10.5 0.0105 P8 GC+SHH+1d culture AATTTTTAAA (9) 1.2 0.0012 P8 GC+SHH+1d culture GATAAACTGA 1.2 0.0012 P8 GC+SHH+1d culture GCTCAAGGAA 1.2 0.0012 P8 GC+SHH+1d culture GTATTTATCT 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TACCATTTAA (9) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex ACTAATTAAG 9.1 0.0091 P1 cortex GCTCAAGGAA 9.1 0.0091 P1 cortex GAGATCAAGA (5) 4.5 0.0045 P1 cortex GTATTTATCT 4.5 0.0045 P1 cortex TTTGCTTATG 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TACCATTTAA (9) 14.5 0.0145 Hypothalamus CTAGCCAGGT 1.8 0.0018 Hypothalamus GGATGCAAAG (2) 1.8 0.0018 Hypothalamus TGTTTACAAG 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CTAGCCAGGT 9.4 0.0094 E12.5 retina GATAAACTGA 7.5 0.0075 E12.5 retina ACTAATTAAG 3.8 0.0038 E12.5 retina GTATTTATCT 3.8 0.0038 E12.5 retina TACCATTTAA (9) 3.8 0.0038 E12.5 retina TGTTTACAAG 3.8 0.0038 E12.5 retina GCTCAAGGAA 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina GTATTTATCT 5.5 0.0055 E14.5 retina AATTTTTAAA (9) 3.6 0.0036 E14.5 retina ACTAATTAAG 3.6 0.0036 E14.5 retina GTGTGGCTTG (3) 3.6 0.0036 E14.5 retina TACCATTTAA (9) 3.6 0.0036 E14.5 retina CACAGTCTCT (2) 1.8 0.0018 E14.5 retina CCAACATCAG (2) 1.8 0.0018 E14.5 retina GATAAACTGA 1.8 0.0018 E14.5 retina GGAGTAAATT 1.8 0.0018 E14.5 retina TATGTCCACA 1.8 0.0018 E14.5 retina TTTAATTCAC (3) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina GTATTTATCT 9.1 0.0091 E16.5 retina TACCATTTAA (9) 3.6 0.0036 E16.5 retina CTAGCCAGGT 1.8 0.0018 E16.5 retina GATAAACTGA 1.8 0.0018 E16.5 retina GGATGCAAAG (2) 1.8 0.0018 E16.5 retina TTTAATTCAC (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GTATTTATCT 10.9 0.0109 E18.5 retina TACCATTTAA (9) 3.6 0.0036 E18.5 retina ACTAATTAAG 1.8 0.0018 E18.5 retina CACAGTCTCT (2) 1.8 0.0018 E18.5 retina GATAAACTGA 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GTATTTATCT 7.9 0.0079 P0.5 retina GTGTGGCTTG (3) 3.9 0.0039 P0.5 retina AAGCCTTACA 2 0.002 P0.5 retina CACAGTCTCT (2) 2 0.002 P0.5 retina GATAAACTGA 2 0.002 P0.5 retina TTTGCTTATG 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GTATTTATCT 14.1 0.0141 P2.5 retina TACCATTTAA (9) 8.8 0.0088 P2.5 retina GCTCAAGGAA 7 0.007 P2.5 retina ACTAATTAAG 3.5 0.0035 P2.5 retina CCAACATCAG (2) 1.8 0.0018 P2.5 retina GATAAACTGA 1.8 0.0018 P2.5 retina GTGTGGCTTG (3) 1.8 0.0018 P2.5 retina TGTATGTATA (6) 1.8 0.0018 P2.5 retina TGTTTACAAG 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TACCATTTAA (9) 15.9 0.0159 P4.5 retina GTATTTATCT 7.9 0.0079 P4.5 retina AATGTATAGC 4 0.004 P4.5 retina GCTCAAGGAA 4 0.004 P4.5 retina ACTAATTAAG 2 0.002 P4.5 retina CTAGCCAGGT 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GTATTTATCT 13.3 0.0133 P6.5 retina TGTTATGCAA (3) 5 0.005 P6.5 retina GATAAACTGA 3.3 0.0033 P6.5 retina GCTCAAGGAA 3.3 0.0033 P6.5 retina TACCATTTAA (9) 3.3 0.0033 P6.5 retina TATGTCCACA 1.7 0.0017 P6.5 retina TGTATGTATA (6) 1.7 0.0017 P6.5 retina TGTTTACAAG 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GTATTTATCT 5.6 0.0056 P10.5 crx- retina GTGTGGCTTG (3) 3.7 0.0037 P10.5 crx- retina TACCATTTAA (9) 3.7 0.0037 P10.5 crx- retina AAGCCTTACA 1.9 0.0019 P10.5 crx- retina ACTAATTAAG 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TACCATTTAA (9) 11.5 0.0115 P10.5 crx+ retina GTATTTATCT 7.7 0.0077 P10.5 crx+ retina CTAGCCAGGT 3.8 0.0038 P10.5 crx+ retina ACTAATTAAG 1.9 0.0019 P10.5 crx+ retina GATAAACTGA 1.9 0.0019 P10.5 crx+ retina GTGTGGCTTG (3) 1.9 0.0019 P10.5 crx+ retina TGTATGTATA (6) 1.9 0.0019 P10.5 crx+ retina TGTTTACAAG 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GTATTTATCT 3.7 0.0037 Adult retinal TACCATTTAA (9) 3.7 0.0037 Adult retinal AATTTTTAAA (9) 1.9 0.0019 Adult retinal CCAACATCAG (2) 1.9 0.0019 Adult retinal TGTTATGCAA (3) 1.9 0.0019 Adult retinal TGTTTACAAG 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GTATTTATCT 3.8 0.0038 ONL TGTATGTATA (6) 3.8 0.0038 ONL AATTTTTAAA (9) 1.9 0.0019 ONL CACAGTCTCT (2) 1.9 0.0019 ONL CTAGCCAGGT 1.9 0.0019 ONL GCTCAAGGAA 1.9 0.0019 ONL GGAGTAAATT 1.9 0.0019 ONL GGATGCAAAG (2) 1.9 0.0019