Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.289490	Nr1d1	nuclear receptor subfamily 1, group D, member 1	11		217166
Gene Ontology	circadian rhythm | DNA binding | nucleus | receptor activity | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	NR1D1[nuclear receptor subfamily 1, group D, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 61 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TCTGTAGCCC (2) 29.4 0.0294 Cb medulloblastoma CTCCCATCCT (4) GACACCGTCC TCTGTAGCCC (2) 67 0.067 P8 GC+1d culture CATTCCGAGA (2) CCACTCGTGG CTCCCATCCT (4) GACACCGTCC GCGGTGGGGG TCTGTAGCCC (2) 50.1 0.0501 P8 GC+SHH+1d culture CCACTCGTGG CTCCCATCCT (4) GCGGTGGGGG GTGCTACTGT (2) TCTGTAGCCC (2) 36.4 0.0364 3T3 fibroblasts CCACTCGTGG CTCCCATCCT (4) TCTGTAGCCC (2) 17.5 0.0175 E15 cortex GACACCGTCC GCGGTGGGGG TCTGTAGCCC (2) 74.2 0.0742 P1 cortex CCACTCGTGG GACACCGTCC TCTGTAGCCC (2) 113.5 0.1135 Hypothalamus CATTCCGAGA (2) CCACTCGTGG CTCCCATCCT (4) GACACCGTCC GTGCTACTGT (2) TCTGTAGCCC (2) 57.9 0.0579 E12.5 retina TCTGTAGCCC (2) 13.1 0.0131 E14.5 retina TCTGTAGCCC (2) 23.7 0.0237 E16.5 retina TCTGTAGCCC (2) 56.1 0.0561 E18.5 retina TCTGTAGCCC (2) 40 0.04 P0.5 retina GACACCGTCC GCGGTGGGGG TCTGTAGCCC (2) 53 0.053 P2.5 retina CATTCCGAGA (2) GCGGTGGGGG GTGCTACTGT (2) TCTGTAGCCC (2) 61.7 0.0617 P4.5 retina CTCCCATCCT (4) GCGGTGGGGG GTGCTACTGT (2) TCTGTAGCCC (2) 61.5 0.0615 P6.5 retina CATTCCGAGA (2) GCGGTGGGGG GTGCTACTGT (2) TCTGTAGCCC (2) 93.3 0.0933 P10.5 crx- retina CATTCCGAGA (2) CCACTCGTGG CTCCCATCCT (4) GCGGTGGGGG TCTGTAGCCC (2) 104.1 0.1041 P10.5 crx+ retina CTCCCATCCT (4) TCTGTAGCCC (2) 65.3 0.0653 Adult retinal CATTCCGAGA (2) CTCCCATCCT (4) GCGGTGGGGG TCTGTAGCCC (2) 37.2 0.0372 ONL TCTGTAGCCC (2) 11.5 0.0115