Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.292729	Traf6	Tnf receptor-associated factor 6	2		22034
Gene Ontology	antigen presentation, exogenous antigen via MHC class II | dendritic cell differentiation | odontogenesis (sensu Vertebrata) | ossification | positive regulation of interleukin-12 biosynthesis | positive regulation of interleukin-6 biosynthesis | protein binding | protein ubiquitination | receptor activity | signal transducer activity | signal transduction | T-helper 1 type immune response | ubiquitin ligase complex | ubiquitin-protein ligase activity | zinc ion binding
Human Homolog	TRAF6[TNF receptor-associated factor 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 77 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCCTTCTTCT (13) 63.6 0.0636 P8 Cb GC CAGGCAAAAC (40) 11.4 0.0114 P8 Cb GC AAGCCTTTGT (3) 4.9 0.0049 P8 Cb GC TGACTGGAAA (2) 4.9 0.0049 P8 Cb GC AAAATCACCA (3) 1.6 0.0016 Cb medulloblastoma CCCTTCTTCT (13) 80.9 0.0809 Cb medulloblastoma CAGGCAAAAC (40) 4.6 0.0046 Cb medulloblastoma TGGCCACAGG (3) 4.6 0.0046 Cb medulloblastoma CCTGGCCCCA 2.3 0.0023 Cb medulloblastoma TGACTGGAAA (2) 2.3 0.0023 P8 GC+1d culture CCCTTCTTCT (13) 12.6 0.0126 P8 GC+1d culture CAGGCAAAAC (40) 5.7 0.0057 P8 GC+1d culture TGGCCACAGG (3) 2.3 0.0023 P8 GC+1d culture AAGCCTTTGT (3) 1.1 0.0011 P8 GC+1d culture TGACTGGAAA (2) 1.1 0.0011 P8 GC+SHH+1d culture CCCTTCTTCT (13) 12.9 0.0129 P8 GC+SHH+1d culture CAGGCAAAAC (40) 11.7 0.0117 P8 GC+SHH+1d culture AAGCCTTTGT (3) 1.2 0.0012 P8 GC+SHH+1d culture TGACTGGAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture TGGCCACAGG (3) 1.2 0.0012 3T3 fibroblasts AAGCCTTTGT (3) 21 0.021 3T3 fibroblasts CAGGCAAAAC (40) 10.5 0.0105 3T3 fibroblasts CCTGGCCCCA 3.5 0.0035 3T3 fibroblasts TGACTGGAAA (2) 3.5 0.0035 3T3 fibroblasts TGGCCACAGG (3) 3.5 0.0035 E15 cortex CCCTTCTTCT (13) 158.3 0.1583 E15 cortex AAGCCTTTGT (3) 4.9 0.0049 E15 cortex CAGGCAAAAC (40) 4.9 0.0049 E15 cortex TGACTGGAAA (2) 4.9 0.0049 P1 cortex CAGGCAAAAC (40) 9.1 0.0091 P1 cortex CCCTTCTTCT (13) 4.5 0.0045 P1 cortex TGGCCACAGG (3) 4.5 0.0045 Hypothalamus CCCTTCTTCT (13) 21.7 0.0217 Hypothalamus CAGGCAAAAC (40) 5.4 0.0054 Hypothalamus TGGCCACAGG (3) 3.6 0.0036 E12.5 retina CCCTTCTTCT (13) 50.7 0.0507 E12.5 retina CAGGCAAAAC (40) 20.7 0.0207 E12.5 retina AAGCCTTTGT (3) 1.9 0.0019 E14.5 retina CCCTTCTTCT (13) 43.7 0.0437 E14.5 retina CAGGCAAAAC (40) 12.8 0.0128 E14.5 retina AAAATCACCA (3) 1.8 0.0018 E14.5 retina AAGCCTTTGT (3) 1.8 0.0018 E16.5 retina CCCTTCTTCT (13) 18.1 0.0181 E16.5 retina CAGGCAAAAC (40) 9.1 0.0091 E16.5 retina AAGCCTTTGT (3) 3.6 0.0036 E16.5 retina TGGCCACAGG (3) 1.8 0.0018 E18.5 retina CAGGCAAAAC (40) 12.7 0.0127 E18.5 retina CCCTTCTTCT (13) 5.5 0.0055 P0.5 retina CAGGCAAAAC (40) 13.7 0.0137 P0.5 retina CCCTTCTTCT (13) 11.8 0.0118 P0.5 retina AAGCCTTTGT (3) 3.9 0.0039 P0.5 retina TGGCCACAGG (3) 2 0.002 P2.5 retina CAGGCAAAAC (40) 24.6 0.0246 P2.5 retina CCCTTCTTCT (13) 15.8 0.0158 P2.5 retina AAGCCTTTGT (3) 1.8 0.0018 P2.5 retina TGACTGGAAA (2) 1.8 0.0018 P4.5 retina CAGGCAAAAC (40) 13.9 0.0139 P4.5 retina CCCTTCTTCT (13) 11.9 0.0119 P4.5 retina TGGCCACAGG (3) 4 0.004 P6.5 retina CAGGCAAAAC (40) 16.7 0.0167 P6.5 retina AAGCCTTTGT (3) 3.3 0.0033 P6.5 retina CCCTTCTTCT (13) 3.3 0.0033 P6.5 retina TGGCCACAGG (3) 1.7 0.0017 P10.5 crx- retina AAGCCTTTGT (3) 22.3 0.0223 P10.5 crx- retina CAGGCAAAAC (40) 11.1 0.0111 P10.5 crx- retina TGACTGGAAA (2) 1.9 0.0019 P10.5 crx- retina TGGCCACAGG (3) 1.9 0.0019 P10.5 crx+ retina CCCTTCTTCT (13) 19.2 0.0192 P10.5 crx+ retina CAGGCAAAAC (40) 13.5 0.0135 P10.5 crx+ retina TGGCCACAGG (3) 1.9 0.0019 Adult retinal CAGGCAAAAC (40) 11.1 0.0111 Adult retinal CCCTTCTTCT (13) 5.6 0.0056 Adult retinal CCTGGCCCCA 3.7 0.0037 Adult retinal AAGCCTTTGT (3) 1.9 0.0019 ONL CAGGCAAAAC (40) 34.5 0.0345 ONL AAAATCACCA (3) 1.9 0.0019 ONL AAGCCTTTGT (3) 1.9 0.0019