Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.293466	Rgmb	RGM domain family, member B	17		68799
Gene Ontology	cell adhesion | ER-Golgi intermediate compartment | extrinsic to plasma membrane, GPI-anchored | protein self binding
Human Homolog	RGMB[RGM domain family, member B]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AAAAAATAAA (17) 11.4 0.0114 P8 Cb GC CTGAAAAAAA (10) 8.2 0.0082 P8 Cb GC GGGAAGGGGG (23) 4.9 0.0049 P8 Cb GC CTGCTCAAAA (2) 1.6 0.0016 P8 Cb GC GGCTGGAGAA (4) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CTGAAAAAAA (10) 18.5 0.0185 Cb medulloblastoma GGGAAGGGGG (23) 13.9 0.0139 Cb medulloblastoma AAAAAATAAA (17) 6.9 0.0069 Cb medulloblastoma AGTGAATGCA (2) 4.6 0.0046 Cb medulloblastoma GGCTGGAGAA (4) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CTGAAAAAAA (10) 9.1 0.0091 P8 GC+1d culture AAAAAATAAA (17) 8 0.008 P8 GC+1d culture GGGAAGGGGG (23) 4.6 0.0046 P8 GC+1d culture TATATGACAG (3) 2.3 0.0023 P8 GC+1d culture TGAAAATAAA (9) 2.3 0.0023 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CTGAAAAAAA (10) 15.2 0.0152 P8 GC+SHH+1d culture TGCCAAGTTC (3) 3.5 0.0035 P8 GC+SHH+1d culture AAAAAATAAA (17) 2.3 0.0023 P8 GC+SHH+1d culture AGTGAATGCA (2) 2.3 0.0023 P8 GC+SHH+1d culture GGGAAGGGGG (23) 2.3 0.0023 P8 GC+SHH+1d culture CTGCTCAAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture GGCTGGAGAA (4) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GGGAAGGGGG (23) 14.8 0.0148 E15 cortex CTGAAAAAAA (10) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GGGAAGGGGG (23) 9.1 0.0091 P1 cortex CTGAAAAAAA (10) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CTGAAAAAAA (10) 14.5 0.0145 Hypothalamus AAAAAATAAA (17) 9.1 0.0091 Hypothalamus AGTGAATGCA (2) 9.1 0.0091 Hypothalamus TGCCAAGTTC (3) 7.2 0.0072 Hypothalamus GGGAAGGGGG (23) 3.6 0.0036 Hypothalamus CTTGATCCTT 1.8 0.0018 Hypothalamus GGCTGGAGAA (4) 1.8 0.0018 Hypothalamus TGAAAATAAA (9) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AAAAAATAAA (17) 9.4 0.0094 E12.5 retina CTGAAAAAAA (10) 9.4 0.0094 E12.5 retina AGTGAATGCA (2) 1.9 0.0019 E12.5 retina GGCTGGAGAA (4) 1.9 0.0019 E12.5 retina GGGAAGGGGG (23) 1.9 0.0019 E12.5 retina TGCCAAGTTC (3) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AAAAAATAAA (17) 5.5 0.0055 E14.5 retina CTGAAAAAAA (10) 5.5 0.0055 E14.5 retina AGTGAATGCA (2) 3.6 0.0036 E14.5 retina GGCTGGAGAA (4) 1.8 0.0018 E14.5 retina GGGAAGGGGG (23) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina AGTGAATGCA (2) 12.7 0.0127 E16.5 retina AAAAAATAAA (17) 9.1 0.0091 E16.5 retina CTGAAAAAAA (10) 7.2 0.0072 E16.5 retina CTTGATCCTT 1.8 0.0018 E16.5 retina GGGAAGGGGG (23) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CTGAAAAAAA (10) 25.5 0.0255 E18.5 retina AAAAAATAAA (17) 16.4 0.0164 E18.5 retina AGTGAATGCA (2) 3.6 0.0036 E18.5 retina CTGCTCAAAA (2) 1.8 0.0018 E18.5 retina TGAAAATAAA (9) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina AGTGAATGCA (2) 11.8 0.0118 P0.5 retina CTGAAAAAAA (10) 5.9 0.0059 P0.5 retina AAAAAATAAA (17) 2 0.002 P0.5 retina GGGAAGGGGG (23) 2 0.002 P0.5 retina TATATGACAG (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CTGAAAAAAA (10) 21.1 0.0211 P2.5 retina AAAAAATAAA (17) 12.3 0.0123 P2.5 retina GGGAAGGGGG (23) 5.3 0.0053 P2.5 retina AGTGAATGCA (2) 3.5 0.0035 P2.5 retina GGCTGGAGAA (4) 1.8 0.0018 P2.5 retina TGCCAAGTTC (3) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AAAAAATAAA (17) 11.9 0.0119 P4.5 retina CTGAAAAAAA (10) 7.9 0.0079 P4.5 retina GGCTGGAGAA (4) 7.9 0.0079 P4.5 retina GGGAAGGGGG (23) 7.9 0.0079 P4.5 retina AGTGAATGCA (2) 4 0.004 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CTGAAAAAAA (10) 15 0.015 P6.5 retina GGGAAGGGGG (23) 15 0.015 P6.5 retina AAAAAATAAA (17) 10 0.01 P6.5 retina AGTGAATGCA (2) 6.7 0.0067 P6.5 retina GGCTGGAGAA (4) 3.3 0.0033 P6.5 retina CTTGATCCTT 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina AGTGAATGCA (2) 27.9 0.0279 P10.5 crx- retina GGGAAGGGGG (23) 11.1 0.0111 P10.5 crx- retina CTGAAAAAAA (10) 7.4 0.0074 P10.5 crx- retina AAAAAATAAA (17) 5.6 0.0056 P10.5 crx- retina TGAAAATAAA (9) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AGTGAATGCA (2) 32.7 0.0327 P10.5 crx+ retina GGGAAGGGGG (23) 11.5 0.0115 P10.5 crx+ retina CTGAAAAAAA (10) 5.8 0.0058 P10.5 crx+ retina GGCTGGAGAA (4) 5.8 0.0058 P10.5 crx+ retina AAAAAATAAA (17) 1.9 0.0019 P10.5 crx+ retina TGAAAATAAA (9) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal AGTGAATGCA (2) 20.4 0.0204 Adult retinal GGGAAGGGGG (23) 11.1 0.0111 Adult retinal CTGAAAAAAA (10) 7.4 0.0074 Adult retinal GGCTGGAGAA (4) 1.9 0.0019 Adult retinal TGCCAAGTTC (3) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AAAAAATAAA (17) 23 0.023 ONL GGCTGGAGAA (4) 5.7 0.0057 ONL CTGAAAAAAA (10) 3.8 0.0038 ONL AGTGAATGCA (2) 1.9 0.0019 ONL CTTGATCCTT 1.9 0.0019 ONL GGGAAGGGGG (23) 1.9 0.0019