Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.294166	Snx10	sorting nexin 10	6		71982
Gene Ontology	intracellular protein transport | intracellular signaling cascade | protein transport | protein transporter activity | transport
Human Homolog	SNX10[sorting nexin 10]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGTGTCAACC (3) 26.1 0.0261 P8 Cb GC AAAGCAAAGC (5) 4.9 0.0049 P8 Cb GC AAAGCAAAAA (9) 3.3 0.0033 P8 Cb GC TGGTTGCTGA (15) 3.3 0.0033 P8 Cb GC AAAGCCAAGC (4) 1.6 0.0016 Cb medulloblastoma TGTGTCAACC (3) 141.1 0.1411 Cb medulloblastoma AAAGCAAAGC (5) 11.6 0.0116 Cb medulloblastoma AAAGCAAAAA (9) 4.6 0.0046 Cb medulloblastoma AAAGCAAAAC (6) 2.3 0.0023 Cb medulloblastoma TGGTTGCTGA (15) 2.3 0.0023 P8 GC+1d culture TGTGTCAACC (3) 27.4 0.0274 P8 GC+1d culture AAAGCAAAAA (9) 5.7 0.0057 P8 GC+1d culture AAAGCAAAGC (5) 3.4 0.0034 P8 GC+1d culture AGCTTCCAGT 2.3 0.0023 P8 GC+1d culture ATCACTTCCT (2) 2.3 0.0023 P8 GC+1d culture CTACTTCTTG (3) 1.1 0.0011 P8 GC+SHH+1d culture TGTGTCAACC (3) 32.8 0.0328 P8 GC+SHH+1d culture AAAGCAAAGC (5) 5.9 0.0059 P8 GC+SHH+1d culture ATCACTTCCT (2) 2.3 0.0023 P8 GC+SHH+1d culture TGGTTGCTGA (15) 2.3 0.0023 3T3 fibroblasts TGTGTCAACC (3) 17.5 0.0175 3T3 fibroblasts TGGTTGCTGA (15) 7 0.007 E15 cortex TGTGTCAACC (3) 14.8 0.0148 E15 cortex AAAGCAAAAC (6) 4.9 0.0049 E15 cortex TGGTTGCTGA (15) 4.9 0.0049 P1 cortex TGTGTCAACC (3) 27.3 0.0273 P1 cortex AAAGCAAAGC (5) 4.5 0.0045 Hypothalamus TGTGTCAACC (3) 63.4 0.0634 Hypothalamus AAAGCAAAGC (5) 38 0.038 Hypothalamus AAAGCCAAGC (4) 1.8 0.0018 Hypothalamus ATGACTGATG 1.8 0.0018 Hypothalamus CTACTTCTTG (3) 1.8 0.0018 Hypothalamus TGGTTGCTGA (15) 1.8 0.0018 E12.5 retina TGTGTCAACC (3) 22.5 0.0225 E12.5 retina AAAGCAAAGC (5) 3.8 0.0038 E12.5 retina AAAGCAAAAA (9) 1.9 0.0019 E12.5 retina GGTCACTTTC (3) 1.9 0.0019 E12.5 retina TGGTTGCTGA (15) 1.9 0.0019 E14.5 retina TGGTTGCTGA (15) 21.9 0.0219 E14.5 retina AAAGCAAAGC (5) 16.4 0.0164 E14.5 retina TGTGTCAACC (3) 12.8 0.0128 E14.5 retina AAAGCAAAAA (9) 1.8 0.0018 E14.5 retina GGTCACTTTC (3) 1.8 0.0018 E16.5 retina TGGTTGCTGA (15) 19.9 0.0199 E16.5 retina TGTGTCAACC (3) 16.3 0.0163 E16.5 retina AAAGCAAAGC (5) 10.9 0.0109 E16.5 retina AAAGCAAAAA (9) 3.6 0.0036 E16.5 retina AAAGCCAAGC (4) 1.8 0.0018 E16.5 retina CTACTTCTTG (3) 1.8 0.0018 E18.5 retina TGTGTCAACC (3) 14.6 0.0146 E18.5 retina AAAGCAAAGC (5) 12.7 0.0127 E18.5 retina AAAGCAAAAA (9) 3.6 0.0036 E18.5 retina GGTCACTTTC (3) 1.8 0.0018 E18.5 retina TGGTTGCTGA (15) 1.8 0.0018 P0.5 retina TGTGTCAACC (3) 27.5 0.0275 P0.5 retina AAAGCAAAGC (5) 7.9 0.0079 P0.5 retina CTACTTCTTG (3) 2 0.002 P0.5 retina TGGTTGCTGA (15) 2 0.002 P2.5 retina TGTGTCAACC (3) 22.9 0.0229 P2.5 retina AAAGCAAAGC (5) 10.6 0.0106 P2.5 retina GGTCACTTTC (3) 3.5 0.0035 P2.5 retina ATGACTGATG 1.8 0.0018 P2.5 retina TGGTTGCTGA (15) 1.8 0.0018 P4.5 retina TGTGTCAACC (3) 27.7 0.0277 P4.5 retina AAAGCAAAAA (9) 15.9 0.0159 P4.5 retina AAAGCAAAGC (5) 13.9 0.0139 P4.5 retina TGGTTGCTGA (15) 5.9 0.0059 P4.5 retina AAAGCAAAAC (6) 2 0.002 P4.5 retina AGCTTCCAGT 2 0.002 P4.5 retina CTACTTCTTG (3) 2 0.002 P4.5 retina GGTCACTTTC (3) 2 0.002 P6.5 retina AAAGCAAAGC (5) 25 0.025 P6.5 retina TGTGTCAACC (3) 23.3 0.0233 P6.5 retina AAAGCAAAAA (9) 8.3 0.0083 P6.5 retina TGGTTGCTGA (15) 8.3 0.0083 P6.5 retina CCACTGTCAG (4) 1.7 0.0017 P10.5 crx- retina TGTGTCAACC (3) 65 0.065 P10.5 crx- retina AAAGCAAAGC (5) 22.3 0.0223 P10.5 crx- retina AAAGCAAAAA (9) 1.9 0.0019 P10.5 crx- retina TGGTTGCTGA (15) 1.9 0.0019 P10.5 crx+ retina AAAGCAAAGC (5) 42.3 0.0423 P10.5 crx+ retina TGTGTCAACC (3) 36.5 0.0365 P10.5 crx+ retina AAAGCAAAAA (9) 15.4 0.0154 P10.5 crx+ retina TGGTTGCTGA (15) 3.8 0.0038 P10.5 crx+ retina AGCTTCCAGT 1.9 0.0019 P10.5 crx+ retina CCACTGTCAG (4) 1.9 0.0019 P10.5 crx+ retina GGTCACTTTC (3) 1.9 0.0019 Adult retinal TGTGTCAACC (3) 25.9 0.0259 Adult retinal AAAGCAAAAA (9) 14.8 0.0148 Adult retinal AAAGCAAAGC (5) 5.6 0.0056 Adult retinal CCACTGTCAG (4) 1.9 0.0019 Adult retinal TGGTTGCTGA (15) 1.9 0.0019 ONL AAAGCAAAAA (9) 21.1 0.0211 ONL TGGTTGCTGA (15) 11.5 0.0115 ONL AAAGCAAAGC (5) 7.7 0.0077 ONL TGTGTCAACC (3) 7.7 0.0077 ONL CCACTGTCAG (4) 1.9 0.0019 ONL CTACTTCTTG (3) 1.9 0.0019 ONL GGTCACTTTC (3) 1.9 0.0019